View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0171_low_2 (Length: 486)
Name: NF0171_low_2
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 29 - 486
Target Start/End: Original strand, 2877235 - 2877692
Alignment:
| Q |
29 |
aaatgatacgaccttgagtttagaaaaaccactagaagaggggttttggccaccttcgcccttttgcttaagaatcttgtttaatcctggaaggaatacc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877235 |
aaatgatacgaccttgagtttagaaaaaccactagaagaggggttttggccacctttgcccttttgcttaagaatcttgtttaatcctggaaggaatacc |
2877334 |
T |
|
| Q |
129 |
ctgaatttgcaatgtgtcccccactacgaaaaattgtttcttcaacaaaacaaatatgcacaaaacctgaggcagtaagctaatacaataataaagatac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877335 |
ctgaatttgcaatgtgtcccccactacgaaaagttgtttcttcaacaaaacaaatatgcacaaaacctgaggcagtaagctaatacaataataaagatac |
2877434 |
T |
|
| Q |
229 |
attcttctggacaatgggaaatctctgtaaacacattatcatttttacaccactaaataaactacgagaattcgcccaacacacgctgagttacttaaat |
328 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877435 |
atccttctggacaatgggaaatctctgtaaacacattatcatttttacaccactaaataaactacgagaattcgcccaacacacgctgagttacttaaat |
2877534 |
T |
|
| Q |
329 |
caggagttgttcaagttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttctttttcttaggtttaggcttgg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877535 |
caggagttgttcaagttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttctttttcttaggtttaggcttgg |
2877634 |
T |
|
| Q |
429 |
atgaaatgccttccatttgtgctgcactcctcctctttgcagtgttagtagcaggctt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877635 |
atgaaatgccttccatttgtgctgcactcctcctctttgcagtgttagtagcaggctt |
2877692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 486
Target Start/End: Complemental strand, 40706910 - 40706764
Alignment:
| Q |
343 |
gttctgaaaaagctctggaagatgggcgttagtcagcttggtcctcttggtgatttcgttcttcttttt---cttaggtttaggcttggatgaaatgcct |
439 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||| | || | || |||||||| |||| ||| |
|
|
| T |
40706910 |
gttctgaaaaagctccggaagatgggcattggtcagcttggttctcttggtgatttcattcttcttcctagaattggacttgggcttggaagaaacgcca |
40706811 |
T |
|
| Q |
440 |
tccatttgtgctgcactcctcctctttgcagtgttagtagcaggctt |
486 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40706810 |
tcaatttgtgctgcactcctcctctttgcagtgttggtagcaggctt |
40706764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 960 times since January 2019
Visitors: 2242