View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_low_3 (Length: 419)
Name: NF0171_low_3
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 2515764 - 2516067
Alignment:
| Q |
12 |
agaacctgtgaagtaccgacacaaacacaggacgcgtcgagnnnnnnnctgattgaatgtaatcacatgtgatgtgtcggtgttggagtataccatacat |
111 |
Q |
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| T |
2515764 |
agaacctatgaagtaccgacacaaacacaggacgcgtcgagaaaaaaactgattgaatgtaatcacatgtgatgtgtcggtgttggagtataccatacat |
2515863 |
T |
|
| Q |
112 |
gtgaacgcagaaaagtagcaaattttttacctagattaatccaagttaaaaattgtgagatgacaatgcagaaaaggaagtaaatgcttttattctctaa |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2515864 |
gtgaatgcagaaaagtagcaaattttttacctagattaatccaagttaaaaattgtgagatgacaatgcagaaaaggaagtaaatgcttttattctctaa |
2515963 |
T |
|
| Q |
212 |
caataacaccataaaagattacacagctccctggattatcaggaacacagtctcatcatatattcatagatatgaaaaaagatgactaccaaggtggtat |
311 |
Q |
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| T |
2515964 |
caataacaccataaaagattacacagctccctggattatcaggaacacagtctcatcatatattcatagatatgaaaaaagatgactaccaaggtggtat |
2516063 |
T |
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| Q |
312 |
aaag |
315 |
Q |
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|||| |
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| T |
2516064 |
aaag |
2516067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 2496344 - 2496446
Alignment:
| Q |
169 |
agatgacaatgcagaaaaggaagtaaatgcttttattctctaacaataacaccataaaagattacacagctccctggattatcaggaacaca-gtctcat |
267 |
Q |
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||||||||||||| ||| | ||| ||||||||||||| |||| ||||||||| ||| | |||| ||||||||||| | ||||||||||||| ||||||| |
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| T |
2496344 |
agatgacaatgcacaaaggcaagcaaatgcttttattttctatcaataacac--taatacattatacagctccctgaactatcaggaacacaggtctcat |
2496441 |
T |
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| Q |
268 |
catat |
272 |
Q |
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||||| |
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| T |
2496442 |
catat |
2496446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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