View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0171_low_4 (Length: 415)
Name: NF0171_low_4
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Original strand, 25811629 - 25812004
Alignment:
| Q |
30 |
acatccactttagtagtcatctccttccgctagatccaacctcattgatgtcccaaaataacattttactccaattttacatgcatatcctttaatcttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25811629 |
acatccactttagtagtcatctccttccgctagacccaacctcattgatgtcccaaaataacattttactccaattttacatgcatatcctttaatcttt |
25811728 |
T |
|
| Q |
130 |
tatgaacatatgtttcatactatcaacttgcacacttgattaaaagttgggcccatgttgtttaacacatatcacatcccacatgaaattggctagcctt |
229 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25811729 |
tatgaacatgtgtttcatactatcaacttgcacacttgattaaaagttgggcccatgttgtttaacacatatcacatcccacatgaaattggctagcctt |
25811828 |
T |
|
| Q |
230 |
tttcaacttttgaagattcaatccaaccgtacatctcttcactatcacaaaattttgctatatatgaacaaataaataaaatccaataactacaaaacta |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25811829 |
tttcaacttttgaagattcaatccaaccgtacatctcttcactatcacaaaattttgctatatatgaacaaataaataaaatccaataactacaaaacta |
25811928 |
T |
|
| Q |
330 |
actgaaatactgaaccttgtccttcctcctttgtcctttcaaaaaacctccacttatttaacttctctcctttctt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25811929 |
actgaaatactgaaccttgtccttcctcctttgtcctttcaaaaaacctccacttatttaacttctctcctttctt |
25812004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 848 times since January 2019
Visitors: 2240