View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_low_6 (Length: 394)
Name: NF0171_low_6
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 47 - 208
Target Start/End: Complemental strand, 5522415 - 5522254
Alignment:
| Q |
47 |
ggaatcatcatgaacactaaaggggaaataataattcaagagtttgaagattgaatgtttaattagttttaggaaatgggaggaaacaattaataatgtg |
146 |
Q |
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| T |
5522415 |
ggaatcatcatgaagactaaaggggaaatagtaattcaagagtttgaagattgaatgtttaattagttttaggaaatgggaggaaacaattaataatgtg |
5522316 |
T |
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| Q |
147 |
ttggtttgattggataatgccacatgtttatggcaaaacatactttggttgacactaataaa |
208 |
Q |
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| T |
5522315 |
ttcgtttgattggacaatgccatatgtttatgaccaaacatactttggttgacactaataaa |
5522254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 5521202 - 5521095
Alignment:
| Q |
274 |
atagaacttactagacacacgtgagtaataacaacacacactcacataagaagnnnnnnnnnntctaccctttccctcattcttactccctccctcccat |
373 |
Q |
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| T |
5521202 |
atagaacttactaaacacacgtgagtaataacaacacacactcacataagaagaaaaaaaaaatctaccctttccctcattcttactccctccctcccat |
5521103 |
T |
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| Q |
374 |
aactctct |
381 |
Q |
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|||||||| |
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| T |
5521102 |
aactctct |
5521095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 51754596 - 51754673
Alignment:
| Q |
125 |
ggaggaaacaattaataatgtgttggtttgattggataatgccacatgtttatggcaaaacatactttggttgacact |
202 |
Q |
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| T |
51754596 |
ggaggaaacaattaataataggttggtttgattggacaatgccatatgtttatgacaaaacatactttggttgacact |
51754673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 51766540 - 51766578
Alignment:
| Q |
170 |
atgtttatggcaaaacatactttggttgacactaataaa |
208 |
Q |
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| T |
51766540 |
atgtttatgacaaaacatactttggttgacactaataaa |
51766578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 26895031 - 26894949
Alignment:
| Q |
278 |
aacttactagacacacgtgagtaataacaacacacactcacataagaagnnnnnnnnnntctaccctttccctcattcttact |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26895031 |
aacttactagacacacgtgagtaataacaacacacattcacataagaagaaaaaaaaagtctaccctttccctcattcttact |
26894949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 26900470 - 26900388
Alignment:
| Q |
278 |
aacttactagacacacgtgagtaataacaacacacactcacataagaagnnnnnnnnnntctaccctttccctcattcttact |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
26900470 |
aacttactagacacacgtgagtaataacaacacacattcacataagaagaaaaaaaaagtctaccctttccctcattcttact |
26900388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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