View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0171_low_7 (Length: 329)
Name: NF0171_low_7
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 32 - 319
Target Start/End: Complemental strand, 24224194 - 24223907
Alignment:
| Q |
32 |
aatattaataaaatttctgataataacattgtgtgtctatgagacaatatatcatttgaagctaacgtaggcaaagaagtacacgccaagaagcaaagag |
131 |
Q |
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| T |
24224194 |
aatattaataaaatttctgataataacattgtgtgtctatgagacaatatatcatttgaagctaacgtaggcaaagaagtacacgccaagaagcaaagag |
24224095 |
T |
|
| Q |
132 |
acaaaattttgttctcaataccatgacccagtttttcattccttataacttatatttttgtcttttaatttgtctcaagtactataggaagttgcattct |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224094 |
acaaaattttgttctcaataccatgacccagtttttcattccttataacttatatttttgtcttttaatttgtctcaagtactataggaagttgcattct |
24223995 |
T |
|
| Q |
232 |
cctttcatgccattcgtttacaataatgtaaggatgaagagcaggccttagtatgtaccccacttcacatatatataatttccctatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24223994 |
cctttcatgccattcgtttacaataatgtaaggatgaaaagcaggccttagtatgtaccccacttcacatatatataatttccctatg |
24223907 |
T |
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