View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0171_low_8 (Length: 315)
Name: NF0171_low_8
Description: NF0171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0171_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 32627787 - 32628065
Alignment:
| Q |
29 |
agaagcatggacccatttcagtccccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatc |
128 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32627787 |
agaagcatggacccatttcagtccccatttcatcaagtagtttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggtagatc |
32627886 |
T |
|
| Q |
129 |
gttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgat |
228 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627887 |
gttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgat |
32627986 |
T |
|
| Q |
229 |
ccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627987 |
ccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctc |
32628065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 307
Target Start/End: Original strand, 32704047 - 32704293
Alignment:
| Q |
65 |
gtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatc----atatattcgggagatttat |
160 |
Q |
| |
|
|||| ||||||||||| |||| |||||| |||||| |||||||||| || || ||||||||||||||||| | | |||||||| |||||||||| |
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| T |
32704047 |
gtagattttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaaagaccttatatatattcaggagatttat |
32704146 |
T |
|
| Q |
161 |
gattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaa |
260 |
Q |
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|
||||||| | |||||||| |||||||||||| |||||| ||||| ||||| ||||||||||||||| |||| |||||||||| || |||||||||| ||| |
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| T |
32704147 |
gattaagctctcgacaaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaattgccaa |
32704246 |
T |
|
| Q |
261 |
gcttttggagagtgtgttgttgtacatgctggttatggcttcatctc |
307 |
Q |
| |
|
|||| ||| |||||| || ||||||||| | ||||||||||| |||| |
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|
| T |
32704247 |
gcttatggggagtgttttattgtacatgtttgttatggcttcttctc |
32704293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 307
Target Start/End: Original strand, 7298000 - 7298224
Alignment:
| Q |
83 |
tgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagctt |
182 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| | | ||| || ||||||||| | || ||||||||| ||| || | || | | |||||||| |
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|
| T |
7298000 |
tgtcaagtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagctt |
7298099 |
T |
|
| Q |
183 |
ttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttg |
282 |
Q |
| |
|
|||||||| ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| | ||||| ||| | |
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| T |
7298100 |
ctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggag |
7298199 |
T |
|
| Q |
283 |
tacatgctggttatggcttcatctc |
307 |
Q |
| |
|
|| | ||| |||||||||||||||| |
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|
| T |
7298200 |
tagaggcttgttatggcttcatctc |
7298224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 32709802 - 32709952
Alignment:
| Q |
106 |
ttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatcta |
205 |
Q |
| |
|
|||||||| || ||||| | ||||||||| || | | | ||||||||||||| |||||| | | |||||||||||||||||| || ||||||| ||| |
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|
| T |
32709802 |
ttgaagtcgttacccggcaaatcgttcaagaagaccttgtattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctg |
32709901 |
T |
|
| Q |
206 |
agatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattg |
256 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
32709902 |
ataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaattg |
32709952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 7293498 - 7293599
Alignment:
| Q |
55 |
atttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggag |
154 |
Q |
| |
|
||||| ||||||||||| | ||| || | ||||| |||||||| ||| ||||||||||||| || | |||||||| ||||| ||| | |||||||||| |
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|
| T |
7293498 |
atttcatcaagtagtttatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccctgaaagatcgttaaaaaagatcttgtattcgggag |
7293597 |
T |
|
| Q |
155 |
at |
156 |
Q |
| |
|
|| |
|
|
| T |
7293598 |
at |
7293599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 5811435 - 5811667
Alignment:
| Q |
32 |
agcatggacccatttcagtccccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgtt |
131 |
Q |
| |
|
|||| |||||||||||||| ||||||| | | |||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||||||||||| |
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|
| T |
5811435 |
agcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtagatcgtt |
5811534 |
T |
|
| Q |
132 |
caaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatcca |
231 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| || |||||||||| |||||||||| |||| |
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|
| T |
5811535 |
caaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtcca |
5811634 |
T |
|
| Q |
232 |
gaagagcaacctaagtctgcaattgtcaagctt |
264 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |
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|
| T |
5811635 |
aaagagcaacccaagtctgcaattgccaagctt |
5811667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 279
Target Start/End: Original strand, 27736775 - 27737001
Alignment:
| Q |
53 |
ccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcggg |
152 |
Q |
| |
|
||||||| ||| ||||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||| ||||||| || |
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|
| T |
27736775 |
ccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcagg |
27736874 |
T |
|
| Q |
153 |
agatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgca |
252 |
Q |
| |
|
||||||||||| | | | ||||||| ||||||||| |||||||||| ||| | |||||||||| |||||||| ||| |||||||||| ||||||||| |
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|
| T |
27736875 |
agatttatgatgatgcacttgacaaagtttttccacacctttgataatttctgatatcaccaacatagtgtttggcccaaaagagcaacccaagtctgca |
27736974 |
T |
|
| Q |
253 |
attgtcaagcttttggagagtgtgttg |
279 |
Q |
| |
|
|||| ||||||| ||| ||||||||| |
|
|
| T |
27736975 |
attgccaagcttctgggaagtgtgttg |
27737001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 253
Target Start/End: Complemental strand, 20115983 - 20115800
Alignment:
| Q |
70 |
ttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcat-atattcgggagatttatgattaagt |
168 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||||||||||||| | | ||| |||||| ||||||| |||||| | | |
|
|
| T |
20115983 |
ttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccggatagatcgttcaaagaga-catcatattcaggagattcatgattcaat |
20115885 |
T |
|
| Q |
169 |
tttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaa |
253 |
Q |
| |
|
| | |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
20115884 |
tctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
20115800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 253
Target Start/End: Original strand, 21943673 - 21943859
Alignment:
| Q |
67 |
agtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaa |
166 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||| | ||||||| || ||||| ||||||||||||||||||| | ||||||||||||||| |||||| | |
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|
| T |
21943673 |
agtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagattcatgattca |
21943772 |
T |
|
| Q |
167 |
gttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaa |
253 |
Q |
| |
|
| | ||||||||||||||||||| || ||||| || |||||||||||||||| ||| ||||||||| ||||| |||||||||| |
|
|
| T |
21943773 |
actcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtatttagtccagaagaacaacccaagtctgcaa |
21943859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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