View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0172-INSERTION1 (Length: 689)

Name: NF0172-INSERTION1
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0172-INSERTION1
NF0172-INSERTION1
[»] chr7 (1 HSPs)
chr7 (8-675)||(43428455-43429117)


Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 8 - 675
Target Start/End: Original strand, 43428455 - 43429117
Alignment:
Q  8 agctcttcaggttccgatgaacgatgctccaccaggaaagtcgtgaaatctcagtgcaaaaccgaagaggttgaacctggaaaattcgttcggaaatgcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43428455 agctcttcaggttccgatgaacgatgctccaccaggaaagtcgtgaaatctcagtgcaaaaccgaagaggttgaacctggaaaattcgttcggaaatgcg 43428554  T
Q  108 agaaaactgaagagcttctcaaaacttgcgctggaaagtcagtaatacccttctccttttcctctttattataaccctattcccaatttatttcatattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43428555 agaaaactgaagagcttctcaaaacttgcgctggaaagtcagtaatacccttctccttttcctctttattacaaccctattcccaatttatttcatattt 43428654  T
Q  208 gatttattaggtattatgaataggatgattgggatttttaatcaannnnnnngaatattttaaattgaatatgaaatggcgtagctgacacatattagaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43428655 gatttattaggtattatgaataggatgattgggatttttaatcaatttttttgaatattttaaattgaatatgaaatggcgtagctgacacatattagaa 43428754  T
Q  308 ttagggtaaagaatagttt-tttaaaatttgttatttgaagttgttagggagagctggtgtatgtttgaagcatggtggatttgatgaaatcacgatttt 406  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43428755 ttagggtaaagaatagtttgttcaaaatttgttatttgaagttgttagggagagctggtgtatgtttgaagcacggtggatttgatgaaatcacgatttt 43428854  T
Q  407 gttgaatctcccttgtagcttttgcaaaat--cagtgactcactgtaattctgtcaaactgactgtgctaaattttgtagataatccattaaaacatcct 504  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  43428855 gttgaatctcccttgtagcttttgcaaaatcacagtgactcactgtaattctgtcaaactgac--tgctaaattttgtagataatccattaaaacatcct 43428952  T
Q  505 gtcctttatgaaatctctgtggtgttgtacttgtatgtcaatcttgtttacatctattgttttcgtacaagaataaaatatgctaaaaccaccaaaggtt 604  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43428953 gtcctttatgaaatctctgtggtg------ttgtatgtcaatcttgtttacatctattgttttcgtacaagaataaaatatgctaaaaccaccaaaggtt 43429046  T
Q  605 tcgaatgaagggagtatttgttttagcatttttaagatataatttgaatgaccagtttttgactatagtag 675  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43429047 tcgaatgaagggagtatttgttttagcatttttaagatctaatttgaatgaccagtttttgactatagtag 43429117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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