View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172-INSERTION2 (Length: 415)
Name: NF0172-INSERTION2
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172-INSERTION2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 415
Target Start/End: Complemental strand, 48642497 - 48642091
Alignment:
| Q |
8 |
gaaacaaacaaaagtaagcagattctctttttctttccaaaaattgccttgatcgg-atgtcaaaatgtgtccttcaatgtaaaaggtattgtaaagtca |
106 |
Q |
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| T |
48642497 |
gaaacaaacaaaagtaagcagattctctttttctttccaaaaattgccttgatcggtatgtcaaaatgtgtccttcaatgtaaaaggtattgtaaagtca |
48642398 |
T |
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| Q |
107 |
ttacacctttacttaatgttcatcacacatatgtcacaagggtagactgaaccccttttggtgcacaaatcaggttgacatgagagaaaccattgcatcg |
206 |
Q |
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| T |
48642397 |
ttacacctttacttaatgttcatcacacat--gtcacaagggtagactgaaccccttttggtgcacaaatcaggttgacatgagagaaaccattgcatcg |
48642300 |
T |
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| Q |
207 |
gcagattctggtccatcattattcacacttggtataatgttatcgggagatacaaaatttacaaactctttgagttctgtaaagctgcaatgctcactgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48642299 |
gcagattctggtccatcattattcacacttggtataatgttatcgggagatacaaaatttacaaactctttgagttctgtaaagctgcaatgctcactgt |
48642200 |
T |
|
| Q |
307 |
aaggaacctcatacctgataaaaaagaaaacatcagttactaaatagctaaacaaacttaatgaaagcgagcaaactctttcaaacaacatttgtgcccc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48642199 |
aaggaacctcatacctgataaaaaagaaaacatcagttactaaatagctaaacaaacttaatgaaagcgagcaaactctttcaaacaacctttgtgcccc |
48642100 |
T |
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| Q |
407 |
cattagtat |
415 |
Q |
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| T |
48642099 |
cattagtat |
48642091 |
T |
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