View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0172-INSERTION3 (Length: 708)

Name: NF0172-INSERTION3
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0172-INSERTION3
NF0172-INSERTION3
[»] chr6 (5 HSPs)
chr6 (7-708)||(33890531-33891249)
chr6 (525-678)||(33887615-33887767)
chr6 (520-572)||(10657137-10657189)
chr6 (531-574)||(33080710-33080753)
chr6 (539-580)||(7946025-7946066)
[»] chr8 (6 HSPs)
chr8 (522-575)||(2482744-2482797)
chr8 (519-580)||(4389821-4389882)
chr8 (531-575)||(16163406-16163450)
chr8 (524-561)||(43569047-43569084)
chr8 (539-575)||(2840241-2840277)
chr8 (539-575)||(2844928-2844964)
[»] chr7 (6 HSPs)
chr7 (539-580)||(425973-426014)
chr7 (529-575)||(32156891-32156937)
chr7 (523-575)||(46945777-46945829)
chr7 (528-570)||(7612346-7612388)
chr7 (522-575)||(48131231-48131284)
chr7 (520-580)||(27508073-27508133)
[»] chr5 (14 HSPs)
chr5 (528-575)||(30291143-30291190)
chr5 (523-575)||(3255749-3255801)
chr5 (532-580)||(17844974-17845022)
chr5 (532-582)||(34736671-34736720)
chr5 (522-580)||(38104998-38105056)
chr5 (524-582)||(40731347-40731405)
chr5 (523-580)||(26796340-26796397)
chr5 (523-580)||(26799858-26799915)
chr5 (523-580)||(26807408-26807465)
chr5 (530-582)||(6593175-6593227)
chr5 (525-569)||(11615409-11615453)
chr5 (523-551)||(27104549-27104577)
chr5 (539-575)||(40731176-40731212)
chr5 (528-564)||(41819505-41819541)
[»] chr4 (8 HSPs)
chr4 (528-575)||(50298413-50298460)
chr4 (529-575)||(39886715-39886761)
chr4 (522-580)||(47771873-47771931)
chr4 (520-580)||(17223267-17223327)
chr4 (528-580)||(22539188-22539239)
chr4 (522-575)||(39178370-39178423)
chr4 (523-556)||(46860271-46860304)
chr4 (522-575)||(11155530-11155585)
[»] chr1 (7 HSPs)
chr1 (531-574)||(10199536-10199579)
chr1 (528-583)||(35058897-35058952)
chr1 (524-564)||(19389796-19389836)
chr1 (528-584)||(27820481-27820536)
chr1 (528-575)||(31517878-31517925)
chr1 (528-575)||(48064191-48064238)
chr1 (529-585)||(4576661-4576717)
[»] chr3 (9 HSPs)
chr3 (531-575)||(44014178-44014222)
chr3 (527-558)||(29520628-29520659)
chr3 (523-580)||(9995852-9995909)
chr3 (523-580)||(10216869-10216926)
chr3 (523-580)||(10220388-10220445)
chr3 (527-572)||(45083041-45083086)
chr3 (528-573)||(49465804-49465849)
chr3 (532-580)||(5456738-5456785)
chr3 (523-551)||(29094288-29094316)
[»] chr2 (5 HSPs)
chr2 (520-580)||(1056236-1056296)
chr2 (528-577)||(4773087-4773135)
chr2 (528-581)||(21828138-21828191)
chr2 (520-572)||(43530243-43530296)
chr2 (528-580)||(41702326-41702378)


Alignment Details
Target: chr6 (Bit Score: 603; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Complemental strand, 33891249 - 33890531
Alignment:
Q  7 acacatttccttacataaactgttttagattgccacatgcgaacttttctggatttaagcatcttaagacacttgtgatagaggaattcaaagtagagaa 106  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33891249 acacatttccttacataaactgttttcgattgccacatgccaacttttctggatttaagcatcttaagacgcttgtgatagaggaattcaaagtagagaa 33891150  T
Q  107 ggatgtcttgttatatctgttttataaatgcttcaatcttggaaaccttatcttcatagattgtatattccaccacatgattcatatggttagttccaca 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33891149 ggatgtcttgttatgtctgttttataaatgcttcaatcttggaaaccttatcttcatagattgtatattccaccacatgattcatatggttagttccaca 33891050  T
Q  207 ttgcgtagtctcaagctaactacttctcgccttccaacgaagattggtaccgcggcctcagaccttccgtccttcgtctactgtgaaaacattctttcta 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33891049 ttgcgtagtctcaagctaattacttctcgccttccaacgaagattggtatcacggcctcagaccttccgtccttcgtctactgtgaaaacattctttcta 33890950  T
Q  307 ttttctctatcgatttgcccaagttatcaaagttttgcttaactccatggaatttgaagagttagaaattccacgtgcctttgctctcttggcttctctg 406  Q
    |||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33890949 tttcatctatcgattcgcccaagttatcaaagttttgcttaactccatggagtttgaagagttagaaattccacgtgcctttgctctcttggcttctctg 33890850  T
Q  407 cctcagcttcagaatctaagcttatttttcatgtctccgtcacaaat-----------------acatgatgtccagtttcaaatacagaatttgtatta 489  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||                 ||||||||||||||||||||||||||||||||||||    
T  33890849 cctcagcttcagaatctaagcttatttttcgtgtctccgtcacaaataaaacctcattcattccacatgatgtccagtttcaaatacagaatttgtatta 33890750  T
Q  490 tactaaaacagtttgagtttgttagcttttgtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtctaattca 589  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33890749 tactaaaacagtttgagtttattagcttttgtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtttaattca 33890650  T
Q  590 aagtcacaatcagttctatttctttcattatgctctaactgctattaactcttgtctttctgtcattttcatagcaacatttatcacagttttgtgtaat 689  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33890649 aagtcacaatcagttctatttctttcatcatgctctaactgctattaactcttgtctttctgtcattttcatagcaacatttatcacagttttgtgtaat 33890550  T
Q  690 gtgatggaactcctacaat 708  Q
    |||||||||||||||||||    
T  33890549 gtgatggaactcctacaat 33890531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 525 - 678
Target Start/End: Complemental strand, 33887767 - 33887615
Alignment:
Q  525 tatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtctaattcaaagtcacaatcagttctatttctttcattatgctc 624  Q
    ||||||||||  ||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||| |||| || ||| |||||||||||||||||||    
T  33887767 tatatgataaacgtttatgctattagctgcaagataagttttttatccaaagagggcctaattcaaagacacattctgttgtatttctttcattatgctc 33887668  T
Q  625 taactgctattaactcttgtctttctgtcattttcatagcaacatttatcacag 678  Q
    |||||| | ||||||||| |||||||||| | ||||| ||||||||||||||||    
T  33887667 taactgttgttaactcttatctttctgtc-tattcattgcaacatttatcacag 33887615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 572
Target Start/End: Complemental strand, 10657189 - 10657137
Alignment:
Q  520 gtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatcc 572  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  10657189 gtgcttatatgattattgtttatgctatatgctgcaaaataagttgtttatcc 10657137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 33080710 - 33080753
Alignment:
Q  531 ataagtgtttatgctataagctgcaaaataagttatttatccaa 574  Q
    ||||||| |||||||||||||||||||||||  |||||||||||    
T  33080710 ataagtgcttatgctataagctgcaaaataaactatttatccaa 33080753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 580
Target Start/End: Original strand, 7946025 - 7946066
Alignment:
Q  539 ttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  7946025 ttatgctataagctacaaaataagttgtttatccaaacaggg 7946066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 575
Target Start/End: Complemental strand, 2482797 - 2482744
Alignment:
Q  522 gcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||    
T  2482797 gcttatatgataagtgtttatgctataagcttcaaattaagctgtttatccaaa 2482744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 580
Target Start/End: Complemental strand, 4389882 - 4389821
Alignment:
Q  519 tgtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||| ||||||||||   || |||||||||||||||||||||||||||||||||| ||||    
T  4389882 tgtgctcatatgataagcacttctgctataagctgcaaaataagttatttatccaaacaggg 4389821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 575
Target Start/End: Original strand, 16163406 - 16163450
Alignment:
Q  531 ataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||    
T  16163406 ataagtggttatgctataggctgcaaaataagtcatttatccaaa 16163450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 561
Target Start/End: Complemental strand, 43569084 - 43569047
Alignment:
Q  524 ttatatgataagtgtttatgctataagctgcaaaataa 561  Q
    |||||||||||||  |||||||||||||||||||||||    
T  43569084 ttatatgataagtacttatgctataagctgcaaaataa 43569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 2840277 - 2840241
Alignment:
Q  539 ttatgctataagctgcaaaataagttatttatccaaa 575  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  2840277 ttatgctataagctgcaaaataagttgtttatacaaa 2840241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 2844964 - 2844928
Alignment:
Q  539 ttatgctataagctgcaaaataagttatttatccaaa 575  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  2844964 ttatgctataagctgcaaaataagttgtttatacaaa 2844928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 580
Target Start/End: Original strand, 425973 - 426014
Alignment:
Q  539 ttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  425973 ttatgctataagctgcaaaataagttatttatccaaacaggg 426014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 575
Target Start/End: Complemental strand, 32156937 - 32156891
Alignment:
Q  529 tgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  32156937 tgataagcgtttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 46945829 - 46945777
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||| | ||| ||||||||||||||| |||||| ||||||||||    
T  46945829 cttatatgataagcgcttaagctataagctgcaaactaagttgtttatccaaa 46945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 570
Target Start/End: Complemental strand, 7612388 - 7612346
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttat 570  Q
    |||||||||| ||||||||||||||||||| |||||| |||||    
T  7612388 atgataagtgcttatgctataagctgcaaattaagttgtttat 7612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 575
Target Start/End: Complemental strand, 48131284 - 48131231
Alignment:
Q  522 gcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||||   ||||||| |||||||||||||||||| | ||||||||    
T  48131284 gcttatatgataagcacttatgctgtaagctgcaaaataagttgtgtatccaaa 48131231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 580
Target Start/End: Complemental strand, 27508133 - 27508073
Alignment:
Q  520 gtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||||||||||||||||  | ||||||||||||| |||| | |||||| ||| ||||    
T  27508133 gtgcttatatgataagtgttttggttataagctgcaaattaagctgtttatcaaaataggg 27508073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 30291190 - 30291143
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||    
T  30291190 atgataagtgtttatgctataagctgcaaattaagttggttatccaaa 30291143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 3255749 - 3255801
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    |||||||||||||  |||||||||||| || ||||||||||| ||||||||||    
T  3255749 cttatatgataagcatttatgctataaacttcaaaataagttgtttatccaaa 3255801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 17845022 - 17844974
Alignment:
Q  532 taagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| ||||    
T  17845022 taagtgtttaatctataagctgcaaaataagttacttatccaaacaggg 17844974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 34736671 - 34736720
Alignment:
Q  532 taagtgtttatgctataagctgcaaaataagttatttatccaaagagggtc 582  Q
    ||||||||| |||||||||||||| | |||||| |||||||||||||||||    
T  34736671 taagtgtttgtgctataagctgcaga-taagttgtttatccaaagagggtc 34736720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 580
Target Start/End: Original strand, 38104998 - 38105056
Alignment:
Q  522 gcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| ||||  | ||| |||||||||||||||||||||| |||||||||| ||||    
T  38104998 gcttatatcataaacgcttacgctataagctgcaaaataagttgtttatccaaacaggg 38105056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 582
Target Start/End: Complemental strand, 40731405 - 40731347
Alignment:
Q  524 ttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtc 582  Q
    |||||||||||| | |||| ||||||||| ||  |||||||||||||||||| ||||||    
T  40731405 ttatatgataagcgcttatactataagctacaccataagttatttatccaaacagggtc 40731347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 26796397 - 26796340
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  26796397 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 26796340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 26799915 - 26799858
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  26799915 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 26799858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 26807465 - 26807408
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  26807465 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 26807408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 6593227 - 6593175
Alignment:
Q  530 gataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtc 582  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||| ||||||    
T  6593227 gataaatgattatgctataagctgtaaattaagttgtttatccaaacagggtc 6593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 569
Target Start/End: Complemental strand, 11615453 - 11615409
Alignment:
Q  525 tatatgataagtgtttatgctataagctgcaaaataagttattta 569  Q
    |||||||||| |||| ||||||||||| ||||| |||||||||||    
T  11615453 tatatgataattgttaatgctataagcggcaaactaagttattta 11615409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 551
Target Start/End: Original strand, 27104549 - 27104577
Alignment:
Q  523 cttatatgataagtgtttatgctataagc 551  Q
    |||||||||||||||||||||||||||||    
T  27104549 cttatatgataagtgtttatgctataagc 27104577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 40731212 - 40731176
Alignment:
Q  539 ttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||||||||||||| || ||||||||||    
T  40731212 ttatgctataagctgcaaaataatttgtttatccaaa 40731176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 41819541 - 41819505
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagtt 564  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  41819541 atgataagtgtttatgctataagctgtaaattaagtt 41819505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 50298460 - 50298413
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  50298460 atgataagtgtttatgctataagcttcaaattaagttgtttatccaaa 50298413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 39886715 - 39886761
Alignment:
Q  529 tgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||    
T  39886715 tgataagcgtttatgctataagctgcaaaataatttgtttatccaaa 39886761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 580
Target Start/End: Complemental strand, 47771931 - 47771873
Alignment:
Q  522 gcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||||||||| | |||||||||||||| ||||||||| | |||||||||| ||||    
T  47771931 gcttatatgataagcgcttatgctataagctccaaaataagctgtttatccaaacaggg 47771873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 17223267 - 17223327
Alignment:
Q  520 gtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| ||||||||| |||||||||||| |||||||| |||| |||||| ||| ||||    
T  17223267 gtgcttatctgataagtggttatgctataagttgcaaaatgagttgtttatctaaacaggg 17223327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 22539188 - 22539239
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| | ||||||||||| ||||||| ||||||||||||||||||||||    
T  22539188 atgataagggcttatgctataacctgcaaa-taagttatttatccaaagaggg 22539239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 39178370 - 39178423
Alignment:
Q  522 gcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||||||||||   |||| |||||||||| |||||||||| ||||||||||    
T  39178370 gcttatatgataagcacttatactataagctgtaaaataagttgtttatccaaa 39178423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 556
Target Start/End: Complemental strand, 46860304 - 46860271
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaa 556  Q
    ||||||| ||||||||||||||||||||||||||    
T  46860304 cttatatcataagtgtttatgctataagctgcaa 46860271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 11155530 - 11155585
Alignment:
Q  522 gcttatatgataagtgtttatgctata--agctgcaaaataagttatttatccaaa 575  Q
    ||||||||||| || ||||||||||||  ||||||||| |||||| ||||||||||    
T  11155530 gcttatatgatgagagtttatgctatataagctgcaaagtaagttgtttatccaaa 11155585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 574
Target Start/End: Original strand, 10199536 - 10199579
Alignment:
Q  531 ataagtgtttatgctataagctgcaaaataagttatttatccaa 574  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  10199536 ataagtgtttatgctataagctgcaaaataagttgtttacccaa 10199579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 35058897 - 35058952
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtct 583  Q
    |||||||||| |||||||||||| ||||||||||| | |||||||||| |||||||    
T  35058897 atgataagtgcttatgctataagttgcaaaataagctgtttatccaaacagggtct 35058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 19389836 - 19389796
Alignment:
Q  524 ttatatgataagtgtttatgctataagctgcaaaataagtt 564  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  19389836 ttatatgataagcgtttatgctataagctacaaaataagtt 19389796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 584
Target Start/End: Original strand, 27820481 - 27820536
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtcta 584  Q
    |||||||| | |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  27820481 atgataagcgcttatgctataagctgc-aaataagttgtttatccaaacagggtcta 27820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 575
Target Start/End: Original strand, 31517878 - 31517925
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||| || ||||||||||||||||||| |||| ||||||||||||    
T  31517878 atgataaatgcttatgctataagctgcaaattaagctatttatccaaa 31517925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 575
Target Start/End: Complemental strand, 48064238 - 48064191
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    |||||||| | ||||||||||||||||||| |||||| ||||||||||    
T  48064238 atgataagggcttatgctataagctgcaaattaagttgtttatccaaa 48064191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 585
Target Start/End: Complemental strand, 4576717 - 4576661
Alignment:
Q  529 tgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggtctaa 585  Q
    ||||||| | ||||||||||||||  ||| || |||||||||||||| |||||||||    
T  4576717 tgataagcgcttatgctataagctataaattatgttatttatccaaacagggtctaa 4576661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 575
Target Start/End: Complemental strand, 44014222 - 44014178
Alignment:
Q  531 ataagtgtttatgctataagctgcaaaataagttatttatccaaa 575  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||    
T  44014222 ataagtggttatgctataggctgcaaaataagtcatttatccaaa 44014178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 558
Target Start/End: Original strand, 29520628 - 29520659
Alignment:
Q  527 tatgataagtgtttatgctataagctgcaaaa 558  Q
    ||||||||||||||||||||||||||||||||    
T  29520628 tatgataagtgtttatgctataagctgcaaaa 29520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 9995909 - 9995852
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  9995909 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 9995852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 10216926 - 10216869
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  10216926 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 10216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 10220445 - 10220388
Alignment:
Q  523 cttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||| |||| | |||||| ||||| ||||||||||||| |||||||||| ||||    
T  10220445 cttatatggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaacaggg 10220388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 45083086 - 45083041
Alignment:
Q  527 tatgataagtgtttatgctataagctgcaaaataagttatttatcc 572  Q
    |||||||||| |||||||||||| ||||||| |||||| |||||||    
T  45083086 tatgataagtttttatgctataaactgcaaattaagttgtttatcc 45083041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 573
Target Start/End: Original strand, 49465804 - 49465849
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatcca 573  Q
    |||||||||| ||||||||||| ||||||| |||||||||| ||||    
T  49465804 atgataagtgattatgctataaactgcaaattaagttatttgtcca 49465849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 5456785 - 5456738
Alignment:
Q  532 taagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||| |||||||||||||||| |||||||||| ||||||||| ||||    
T  5456785 taagtgcttatgctataagctgc-aaataagttagttatccaaacaggg 5456738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 551
Target Start/End: Complemental strand, 29094316 - 29094288
Alignment:
Q  523 cttatatgataagtgtttatgctataagc 551  Q
    |||||||||||||||||||||||||||||    
T  29094316 cttatatgataagtgtttatgctataagc 29094288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 1056236 - 1056296
Alignment:
Q  520 gtgcttatatgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    |||||||||||| |||   |||||||||||||||||||| ||||||||||| |||| ||||    
T  1056236 gtgcttatatgacaagcagttatgctataagctgcaaaaaaagttatttattcaaacaggg 1056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 577
Target Start/End: Original strand, 4773087 - 4773135
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaaga 577  Q
    ||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  4773087 atgataagtatttgtgctataagct-ctaaataagttatttatccaaaga 4773135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 581
Target Start/End: Complemental strand, 21828191 - 21828138
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaagagggt 581  Q
    |||||||| | ||||||||||||||||||||||||  |||||| |||| |||||    
T  21828191 atgataagggcttatgctataagctgcaaaataagccatttattcaaacagggt 21828138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 43530243 - 43530296
Alignment:
Q  520 gtgcttatatgataag-tgtttatgctataagctgcaaaataagttatttatcc 572  Q
    |||||||||||||||  || |||||||||||||||||||||  |||||||||||    
T  43530243 gtgcttatatgataaaatgcttatgctataagctgcaaaatttgttatttatcc 43530296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 41702326 - 41702378
Alignment:
Q  528 atgataagtgtttatgctataagctgcaaaataagttatttatccaaagaggg 580  Q
    ||||||||||||| |||||||||||| ||| |||| | |||||||||| ||||    
T  41702326 atgataagtgtttttgctataagctgaaaattaagctgtttatccaaacaggg 41702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 509 times since January 2019
Visitors: 2226