View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172-INSERTION5 (Length: 520)
Name: NF0172-INSERTION5
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172-INSERTION5 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 65 - 333
Target Start/End: Original strand, 37606340 - 37606606
Alignment:
| Q |
65 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatgcctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
164 |
Q |
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| T |
37606340 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatggctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
37606439 |
T |
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| Q |
165 |
atacaaatgcaatggagattggtagyaagaaatcatatatatatctttggrgaaggatctatatgtgggtatacaagagagtttatttttactgttcaca |
264 |
Q |
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| T |
37606440 |
atacaaatgcaatggagattggtagcaagaaatc----atatatctttggagaaggatctatatgtgggtatgcaagagagtttatttttactgttcaca |
37606535 |
T |
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| Q |
265 |
ctgagcaactgaartaagaaaggaattaatggattcg--acacacattcactttgtgcatgcaagcaaaag |
333 |
Q |
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| T |
37606536 |
ctgagcaactgaaataagaaaggaattaatggattcgacacacacattcactttgtgcatgcaagcaaaag |
37606606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 37606636 - 37606737
Alignment:
| Q |
334 |
aggctgtttccgaacctatttt-aatacaagaaatttagtcacaaaatttagaaggaggaagaagctaataatgtatgaaaaatcaggataatgaaatac |
432 |
Q |
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| T |
37606636 |
aggctgtttccgaacctatttttaatacaagaaatttagtcacaaactttagaaggaggaagaagctaataatgtatgaaaaatcaggataatgaaatac |
37606735 |
T |
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| Q |
433 |
tt |
434 |
Q |
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|| |
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| T |
37606736 |
tt |
37606737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 37600103 - 37600204
Alignment:
| Q |
140 |
aagaaaatatttgtagtatcaatttatacaaatgcaatggagattggtagyaagaaatcatatatatatctttggrgaaggatctatatgtgggtataca |
239 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||| |||| |||||||| |||||||||||| |||||||| |||||| ||||||| |
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| T |
37600103 |
aagaaaatatttgtagtgtcaatttatacaaatgaaatggtgattcgtagcaagaaatc----atatatctttggaaaaggatctttatgtgagtataca |
37600198 |
T |
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| Q |
240 |
agagag |
245 |
Q |
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|||||| |
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| T |
37600199 |
agagag |
37600204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 37605877 - 37605935
Alignment:
| Q |
8 |
ataaattggcgctacttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
66 |
Q |
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| T |
37605877 |
ataaattggcgctacttcatcatctcacccatccaggtccaacatcgcaaatctatcta |
37605935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 37606271 - 37606213
Alignment:
| Q |
8 |
ataaattggcgctacttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
66 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37606271 |
ataaattggcactagttcatcctctcacccatccaggtccaacatcacaaatctatcta |
37606213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34750989 - 34751037
Alignment:
| Q |
156 |
tatcaatttatacaaatgcaatggagattggtagyaagaaatcatatat |
204 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
34750989 |
tatcaatttatacaaatgctatggagattggtagcaagaaatcatatat |
34751037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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