View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172-INSERTION7 (Length: 691)
Name: NF0172-INSERTION7
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172-INSERTION7 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 291 - 470
Target Start/End: Complemental strand, 27099197 - 27099018
Alignment:
| Q |
291 |
aaattatatcttatttacgttacaatagaacacattctaaagtctcaagtcactaccacctgaccaacacaagttgattctttttgttcttttgtattat |
390 |
Q |
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| T |
27099197 |
aaattatatcttatttccgttacaatagaacacattataaagtctcaagtcagtaccatctgaccaacacaagttgattctttttgtttttttgtattat |
27099098 |
T |
|
| Q |
391 |
tctatttttatcttaattgctttctagtgtattaatatttgtttgtttatctttatcagtatcctcgggcgaatggttgt |
470 |
Q |
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| T |
27099097 |
tctatttttatcttaattgctttctagtgtattaatatttgtttgtttatctttatcagtatcctcgggcgaatgcttgt |
27099018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 291 - 470
Target Start/End: Original strand, 27179106 - 27179285
Alignment:
| Q |
291 |
aaattatatcttatttacgttacaatagaacacattctaaagtctcaagtcactaccacctgaccaacacaagttgattctttttgttcttttgtattat |
390 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27179106 |
aaattatatcttatttccgttacaatagaacacattataaagtctcaagtcagtaccatctgaccaacacaagttgattctttttgtttttttgtattat |
27179205 |
T |
|
| Q |
391 |
tctatttttatcttaattgctttctagtgtattaatatttgtttgtttatctttatcagtatcctcgggcgaatggttgt |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27179206 |
tctatttttatcttaattgctttctagtgtattaatatttgtttgtttatctttatcagtatcctcgggcgaatgcttgt |
27179285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 547 - 691
Target Start/End: Complemental strand, 27099197 - 27099053
Alignment:
| Q |
547 |
aaattatatcttatttacgttacaatagaacacattctaaagtctcaagtcactaccatctgaccaacacaagttgattctttttgttcttttgtattat |
646 |
Q |
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|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27099197 |
aaattatatcttatttccgttacaatagaacacattataaagtctcaagtcagtaccatctgaccaacacaagttgattctttttgtttttttgtattat |
27099098 |
T |
|
| Q |
647 |
tctatttttatcttaattgctttctagtgtattaatatttgtttg |
691 |
Q |
| |
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| T |
27099097 |
tctatttttatcttaattgctttctagtgtattaatatttgtttg |
27099053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 547 - 691
Target Start/End: Original strand, 27179106 - 27179250
Alignment:
| Q |
547 |
aaattatatcttatttacgttacaatagaacacattctaaagtctcaagtcactaccatctgaccaacacaagttgattctttttgttcttttgtattat |
646 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27179106 |
aaattatatcttatttccgttacaatagaacacattataaagtctcaagtcagtaccatctgaccaacacaagttgattctttttgtttttttgtattat |
27179205 |
T |
|
| Q |
647 |
tctatttttatcttaattgctttctagtgtattaatatttgtttg |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27179206 |
tctatttttatcttaattgctttctagtgtattaatatttgtttg |
27179250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 27099318 - 27099231
Alignment:
| Q |
7 |
agataaaactatgcatgnnnnnnngttgatttgacatacaatggtgtggaccatatggatagcccgtaacgatcttatattttatggt |
94 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27099318 |
agataaaactatgcatgcttttttgttgatttgacatacaatggtgtggaccatttggatagcccgtaacgatcttatattttatggt |
27099231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 27178985 - 27179072
Alignment:
| Q |
7 |
agataaaactatgcatgnnnnnnngttgatttgacatacaatggtgtggaccatatggatagcccgtaacgatcttatattttatggt |
94 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27178985 |
agataaaactatgcatgcttttttgttgatttgacatacaatggtgtggaccatttggatagcccgtaacgatcttatattttatggt |
27179072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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