View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172-INSERTION9 (Length: 688)
Name: NF0172-INSERTION9
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172-INSERTION9 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 26257080 - 26257599
Alignment:
| Q |
11 |
ttatttgaattttcgttgattcattgttttaatttccttgtcattttgtacttatagattttgtgaaatttcttaatgatggtttgggtttattgtattc |
110 |
Q |
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| T |
26257080 |
ttatttgaattttcgttgattcattgttttaatttccttgtcgttttttacttatagattttgtgaaatttcttaatgatggtttgggtttattgtattc |
26257179 |
T |
|
| Q |
111 |
ttaattgattatatataatcgccggtaatggtttccttcgttgttcgtactgcttagaaaatatcttcatcttcatctgcattaagttccttcgt----- |
205 |
Q |
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| T |
26257180 |
ttaattgattatatataatcgccggtaatggtttccttcgttattactactgcttagaaaatatcttcatcttcatctgcattaagttccttcgttgtac |
26257279 |
T |
|
| Q |
206 |
taaagaccacaacaattttaattggtgcttattgtaactgctgttattacttaattagcatataatctctctacacaacaatgttttcactgcattgtta |
305 |
Q |
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| T |
26257280 |
taaagaccacaacaattttaattggtgcttattgtaactgctgttatcacttaattagcatataatctctctacacaacaatgttttcactgcattgtta |
26257379 |
T |
|
| Q |
306 |
aattttcaatttgttctctcttagtatcacattttaaagccatcta-----tcnnnnnnnnnnctaacggcaaagtttattaaaccaagtcactacacaa |
400 |
Q |
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| T |
26257380 |
atttttcaatttgttctctctcagtatcacattttaaagccatctatcttttcttttttttttctaacggcaaagtttattaaaccaagtcactacacaa |
26257479 |
T |
|
| Q |
401 |
gacgaacagagacggaaaaaacaacttaaatgattttaaagccatctagcctttctgnnnnnnnncacaatatctattttaactggtgacaggcattaac |
500 |
Q |
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| T |
26257480 |
gacgaacagagtcggaaaaaacaacttaaatgattttaaagcaatctagcctttctg-tttttttcacaatatctattttaactggtgacaggcattaac |
26257578 |
T |
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| Q |
501 |
caacttatatgattgatttaa |
521 |
Q |
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||| ||||||||||||||||| |
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| T |
26257579 |
caaattatatgattgatttaa |
26257599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 572 - 688
Target Start/End: Original strand, 26257605 - 26257721
Alignment:
| Q |
572 |
tcacttatccgcattatgaattcatttttgtgttctggttttgaactaatgtctaatggtattcatttgaatattagatcagtaactccaactatatcaa |
671 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
26257605 |
tcacttatccacattatgaattcatttttgtgttctggttttgaactaatgtctaatggtatttatttgaatattagatcagtaaccccaactctatcaa |
26257704 |
T |
|
| Q |
672 |
aatgctggatgaaagtg |
688 |
Q |
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|
|||| |||||||||||| |
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| T |
26257705 |
aatggtggatgaaagtg |
26257721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 26237922 - 26238038
Alignment:
| Q |
11 |
ttatttgaattttcgttgattcattgttttaatttccttgtcattttgtacttatagattttgtgaaatttcttaatgatggtttgggtttattgtattc |
110 |
Q |
| |
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|||||||||||| ||| |||| |||| |||| |||| |||||||||||||||||||| ||||||||||||||| | ||| || ||||||||||||| |
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| T |
26237922 |
ttatttgaatttctgttaattctttgtgttaagcaccttatcattttgtacttatagattgtgtgaaatttcttaaaggtggcttcggtttattgtattg |
26238021 |
T |
|
| Q |
111 |
ttaattgattatatata |
127 |
Q |
| |
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|||||||||||| |||| |
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|
| T |
26238022 |
ttaattgattatgtata |
26238038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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