View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172_high_8 (Length: 266)
Name: NF0172_high_8
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 50373046 - 50373253
Alignment:
| Q |
18 |
agcagaacctgtggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgtgagaatgatgagagccacaatccaatttgcagaa |
117 |
Q |
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| T |
50373046 |
agcagaacccctggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgttagaatgatgagagccacaatccaatttgcagaa |
50373145 |
T |
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| Q |
118 |
tgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaacacttcaatccaaccta |
217 |
Q |
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| T |
50373146 |
tgatgagagaaaacagcttaactgcacactaattctactttttacggtcatctatacattttagaaagttagtggaagctaaacacttcaatccaaccta |
50373245 |
T |
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| Q |
218 |
atactatg |
225 |
Q |
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|||||||| |
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| T |
50373246 |
atactatg |
50373253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 48272567 - 48272529
Alignment:
| Q |
164 |
gtcatctatacattttagaaagttagtggaagctaaaca |
202 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
48272567 |
gtcatctatacattttagaaagttagtgcaagctaaaca |
48272529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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