View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0172_low_21 (Length: 251)
Name: NF0172_low_21
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 17037622 - 17037461
Alignment:
| Q |
1 |
tgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagatatggagattgttggca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
17037622 |
tgcaagcacatatcgactatatgtggtctcgaaattagtcaaactcaccacaaatttggaatccatttgtttggttgagaagagatagagattgttggca |
17037523 |
T |
|
| Q |
101 |
gccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
162 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17037522 |
gccactttcaaatatgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
17037461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 8092193 - 8092032
Alignment:
| Q |
1 |
tgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagatatggagattgttggca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
8092193 |
tgcaagcacatatcgactatatgtggtctcaaaattagtcaaactcaccacaaattcggaattcatttgtttggttgagatgagatagagattgttggca |
8092094 |
T |
|
| Q |
101 |
gccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8092093 |
gccactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
8092032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 2334704 - 2334545
Alignment:
| Q |
3 |
caagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagatatggagattgttggcagc |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| | |
|
|
| T |
2334704 |
caagcacatatcgactatatgtggtctcgaaattagtcaaactcaccacaaatttggaatccatttgtttggttgagaagagatagagattgttggcaac |
2334605 |
T |
|
| Q |
103 |
cactttcaaatctgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
162 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2334604 |
cactttcaaatatgcacacataactctagtccaaaaagtccagcaccattgaggcatttt |
2334545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27580463 - 27580356
Alignment:
| Q |
1 |
tgcaagcacatatcgacaatatgtggtcttgaaattagtcaaactcaccataaatttggaattcatttgtttggttgagaagatatggagattgttggca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||||| |||||| |
|
|
| T |
27580463 |
tgcaagcacatatcgactatatgtggtcttgagattagtcaaactcaccacaaatttggaatccatttgtttggctgagaagtgatagagatttttggca |
27580364 |
T |
|
| Q |
101 |
gccacttt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
27580363 |
gccacttt |
27580356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1144 times since January 2019
Visitors: 2244