View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0172_low_23 (Length: 249)
Name: NF0172_low_23
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29568391 - 29568485
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaa |
95 |
Q |
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| T |
29568391 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaa |
29568485 |
T |
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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 29569722 - 29569815
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcaga |
94 |
Q |
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| T |
29569722 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcaga |
29569815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 27918728 - 27918634
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaa |
95 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
27918728 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaa |
27918634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29168333 - 29168239
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaa |
95 |
Q |
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| T |
29168333 |
ggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaa |
29168239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29425374 - 29425281
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcaga |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
29425374 |
ggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcaga |
29425281 |
T |
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Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1758226 - 1758133
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcaga |
94 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
1758226 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcaga |
1758133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27521357 - 27521450
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcaga |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
27521357 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcaga |
27521450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27462078 - 27461990
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtga |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
27462078 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtga |
27461990 |
T |
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Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27482217 - 27482129
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtga |
89 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
27482217 |
ggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtga |
27482129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18986178 - 18986085
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcaga |
94 |
Q |
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|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
18986178 |
ggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcaga |
18986085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 25518560 - 25518468
Alignment:
| Q |
3 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaa |
95 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25518560 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaa |
25518468 |
T |
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