View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0172_low_29 (Length: 203)
Name: NF0172_low_29
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0172_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 27521357 - 27521516
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27521357 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatga |
27521456 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27521457 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 27462078 - 27461919
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27462078 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatga |
27461979 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
160 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27461978 |
tgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 27482217 - 27482058
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27482217 |
ggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatga |
27482118 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
160 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27482117 |
tgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 18986178 - 18986019
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18986178 |
ggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatga |
18986079 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
160 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18986078 |
tgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 1758226 - 1758067
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1758226 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
1758127 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
160 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1758126 |
tgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29569722 - 29569866
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29569722 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatga |
29569821 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569822 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 27918728 - 27918583
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
27918728 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatga |
27918629 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
146 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27918628 |
tgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29425374 - 29425232
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425374 |
ggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
29425275 |
T |
|
| Q |
101 |
tgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425274 |
tgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 29568391 - 29568536
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
29568391 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatga |
29568490 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
146 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
29568491 |
tgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29168333 - 29168171
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
29168333 |
ggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatga |
29168234 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29168233 |
tgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 25518560 - 25518400
Alignment:
| Q |
3 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatg |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
25518560 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatg |
25518461 |
T |
|
| Q |
103 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25518460 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 951 times since January 2019
Visitors: 2241