View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0172_low_3 (Length: 474)

Name: NF0172_low_3
Description: NF0172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0172_low_3
NF0172_low_3
[»] chr7 (3 HSPs)
chr7 (29-212)||(1954813-1954996)
chr7 (292-453)||(1955222-1955384)
chr7 (371-423)||(1960367-1960419)
[»] scaffold0059 (4 HSPs)
scaffold0059 (294-424)||(14781-14911)
scaffold0059 (23-113)||(15268-15358)
scaffold0059 (23-113)||(14021-14111)
scaffold0059 (148-212)||(15157-15221)
[»] scaffold0015 (1 HSPs)
scaffold0015 (293-436)||(183741-183882)
[»] chr2 (2 HSPs)
chr2 (353-436)||(29225334-29225418)
chr2 (353-436)||(29338633-29338717)
[»] chr8 (2 HSPs)
chr8 (371-449)||(36738935-36739015)
chr8 (353-436)||(27352092-27352176)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 1954813 - 1954996
Alignment:
Q  29 gagcagagggactacctcatgatggatcaacatgctgcaattttccgcagtaactagagaatctaccatcatatctatgatgctctcttggtttcgctaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1954813 gagcagagggactacctcatgatggatcaacatgctgcaattttccgcagtaaccagagaatctaccatcatatctatgatgctctcttggtttcgctaa 1954912  T
Q  129 ctcctgaccagtttctgcggtctcgcatgtggcctagggacataacaatttactttggagggggtgctgcatacggtggcacta 212  Q
    |||||||||| ||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||    
T  1954913 ctcctgaccaatttctgcagtcttgcatgtggcctagggacagaacaatttactctggagggggtggtacatacggtggcacta 1954996  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 292 - 453
Target Start/End: Original strand, 1955222 - 1955384
Alignment:
Q  292 tttaaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnn-gttaaatcttgcttttgtgtcctaaaaagaaaatggctaatg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  1955222 tttaaataacttagcttgttgtttgtttttaactaatatgctttggaagaatttttttgttaaatcttgcttttgtgtcctaaaaagaaaatggctaatg 1955321  T
Q  391 aacatcaaagtagaagtgctcgaaagagccaaaatattgagcaaactcaggtgtgtgatgatg 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1955322 aacatcaaagtagaagtgctcgaaagagccaaaatattgagcaaactcaggtgtgtgatgatg 1955384  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 1960367 - 1960419
Alignment:
Q  371 taaaaagaaaatggctaatgaacatcaaagtagaagtgctcgaaagagccaaa 423  Q
    ||||| |||||  ||| |||||||||||||| |||||||||||||||||||||    
T  1960367 taaaacgaaaagtgctcatgaacatcaaagttgaagtgctcgaaagagccaaa 1960419  T

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Target: scaffold0059 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 14911 - 14781
Alignment:
Q  294 taaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnngttaaatcttgcttttgtgtcctaaaaagaaaatggctaatgaac 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||  ||||||    
T  14911 taaataacttagcttgttgtttgtttttaactaatatgctttggaagaatttttttgtaaatcttgcttttgtatcctaaaaagaaaatggcccatgaac 14812  T
Q  394 atcaaagtagaagtgctcgaaagagccaaaa 424  Q
    |||||||| ||| ||||| ||||||||||||    
T  14811 atcaaagttgaattgctcaaaagagccaaaa 14781  T

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Target: scaffold0059; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 15358 - 15268
Alignment:
Q  23 agacaggagcagagggactacctcatgatggatcaacatgctgcaattttccgcagtaactagagaatctaccatcatatctatgatgctc 113  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||  |||| || |||||| || | |||||||| ||| ||||||||||||    
T  15358 agacaggagcagagggactacctcatgatggattagcatgcagccgttttacgaagtaaccagggcatctaccaacatctctatgatgctc 15268  T

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Target: scaffold0059; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 14111 - 14021
Alignment:
Q  23 agacaggagcagagggactacctcatgatggatcaacatgctgcaattttccgcagtaactagagaatctaccatcatatctatgatgctc 113  Q
    |||||||||||||||||||| ||||||||||| |||||||  ||| ||||||| |||||| |  | |||| ||| ||| ||||||||||||    
T  14111 agacaggagcagagggactatctcatgatggaacaacatgtggcagttttccgaagtaaccaaggcatcttccaacatctctatgatgctc 14021  T

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Target: scaffold0059; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 15221 - 15157
Alignment:
Q  148 gtctcgcatgtggcctagggacataacaatttactttggagggggtgctgcatacggtggcacta 212  Q
    |||| ||||||||||| |||||||  || |||||| ||||||||||| |||| ||||||||||||    
T  15221 gtcttgcatgtggcctggggacatgccagtttactctggagggggtggtgcacacggtggcacta 15157  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 436
Target Start/End: Original strand, 183741 - 183882
Alignment:
Q  293 ttaaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnngttaaatcttgcttttgtgtcctaaaaagaaaatggctaatgaa 392  Q
    |||||||||||||||||||||| |||||||||| || |||||||||  |       ||| |||||||||||||| || | |||||||||| ||| |||||    
T  183741 ttaaataacttagcttgttgtt-gtttttaactgatttgctttggataaatttt--gtttaatcttgcttttgtttcttgaaaagaaaattgctcatgaa 183837  T
Q  393 catcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 436  Q
    ||| || ||  |||||||||| ||||||||||| |||||||||||    
T  183838 cattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 183882  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 29225334 - 29225418
Alignment:
Q  353 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 436  Q
    |||||||||||||| || | |||||||||| ||| |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  29225334 aatcttgcttttgtttcttgaaaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 29225418  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 29338633 - 29338717
Alignment:
Q  353 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 436  Q
    |||||||||||||| || | |||||||||| ||| |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  29338633 aatcttgcttttgtttcttgaaaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 29338717  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 36739015 - 36738935
Alignment:
Q  371 taaaaagaaaatggctaatgaacatcaaagt-agaagtgctcgaaagagccaaaatattgagcaaac--tcaggtgtgtgat 449  Q
    |||| ||||||  ||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||  |||||||||||||    
T  36739015 taaagagaaaaatgctcatgaatatcaaagttagaagtgctcgaaagagtc-aaatattgagcaaacattcaggtgtgtgat 36738935  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 27352092 - 27352176
Alignment:
Q  353 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 436  Q
    ||||||| |||||| || | |||||||||| | | |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  27352092 aatcttgtttttgtttcttgaaaagaaaattggtcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 27352176  T

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