View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0174_high_2 (Length: 369)
Name: NF0174_high_2
Description: NF0174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0174_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 91 - 295
Target Start/End: Original strand, 36841986 - 36842190
Alignment:
| Q |
91 |
atacatatacaaaatagtgaaaaagagaatgagaaccacggtgaacccaatacataagtctcaaggaatatcttcccagcttgtgagagcatgtgtgttt |
190 |
Q |
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| T |
36841986 |
atacatatacaaaatagtgaaaaagagaatgagaaccacagtgaacccaatacataagtctcaaggaatatcttcccagcttgtgagagcatgtgtgttt |
36842085 |
T |
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| Q |
191 |
acttgtcctgctttgaggtcaagatcaagacagccagtcaaacgttacagaaaacttcttgctgatatttttccaaaatctccggttcatgtgttatcat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36842086 |
acttgtcctgctttgaggtcaagatcaagacagccagtcaaatgttacagaaaacttcttgctgatatttttccaaaatccccggttcatgtgttatcat |
36842185 |
T |
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| Q |
291 |
acctt |
295 |
Q |
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||||| |
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| T |
36842186 |
acctt |
36842190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 149 - 295
Target Start/End: Complemental strand, 37514055 - 37513910
Alignment:
| Q |
149 |
tctcaaggaatatcttcccagcttgtgagagcatgtgtgtttacttgtcctgctttgaggtcaagatcaagacagccagtcaaacgttacagaaaacttc |
248 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37514055 |
tctcaaggaagatcttcccagcttgtgagagcatgtgtgtttgct-gtcctgctttgaggtcaagatcaagacaaccagtcaaacgttacagaaaacttc |
37513957 |
T |
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| Q |
249 |
ttgctgatatttttccaaaatctccggttcatgtgttatcatacctt |
295 |
Q |
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| T |
37513956 |
ttgctgatatctttccaaaatccccggttcgtgtgttatcatacctt |
37513910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 36842231 - 36842297
Alignment:
| Q |
296 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtctgtgctg |
362 |
Q |
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| T |
36842231 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtttgtgctg |
36842297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 37513869 - 37513803
Alignment:
| Q |
296 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtctgtgctg |
362 |
Q |
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||||||||||||||||||| |||||||| | || |||||||||||||||||||||||| ||||||| |
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| T |
37513869 |
ggagtaattgaatgtaaccttgtgtgtcggatatcggacatgcattcgatttgaaatgtttgtgctg |
37513803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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