View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0174_high_5 (Length: 240)
Name: NF0174_high_5
Description: NF0174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0174_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 2264320 - 2264503
Alignment:
| Q |
57 |
tgtataactctctgtacataaactagccatacacgccataatgaaattccaattcaagtagtcccaaatgttgatgtatatattgatttaacattttcnn |
156 |
Q |
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| T |
2264320 |
tgtataactctctgtacataaactagctatacacgccataatgaaattccaattcaagtagtcccaaatgttgatgtatatattgatttaacattttctt |
2264419 |
T |
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| Q |
157 |
nnnnngaaaaagattaatggtgtgtttggttgagcatccacagtacaaattattgcgtttctatacaaatattatcgcagtttt |
240 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
2264420 |
tttttgaaaaagattaatggtgtgtttggttgagcattctcagtacaaattattgcatttctatacaaatattgtcgcagtttt |
2264503 |
T |
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