View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-1 (Length: 989)
Name: NF0175-Insertion-1
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 430 - 981
Target Start/End: Complemental strand, 33880989 - 33880458
Alignment:
| Q |
430 |
aaaattataaatcgtcatttggtaaaaacctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggatgag |
529 |
Q |
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| T |
33880989 |
aaaattataaatcgtcatttgg-ataaacctccaaccgatacatgcaaagttaatattgatgttttgtttattccttctaatcgtagcactggggat--- |
33880894 |
T |
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| Q |
530 |
tttcgtaaatgattcaatacttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgt--acattggaagtacaaaggatgaaaa |
627 |
Q |
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| T |
33880893 |
-------------tcaatatttccattccaaaattacttccatcaacgcgttaacaactgaaacatggtatgtgtacattggaagtactaaggatgaaaa |
33880807 |
T |
|
| Q |
628 |
tgagtgaatagactttggatacaaaaactgcatatgaaccatgtgctatgaatcaagtggttagttagat--------taatgggtagtacctaagttct |
719 |
Q |
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| T |
33880806 |
tgagtgaataga--------------actgcctatgaaccatgtgctatgaatcaagtggttagttagatacttggattaatgggtagtacctaagttct |
33880721 |
T |
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| Q |
720 |
tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaattnnnnnnntataaaataaacagcacatccttagtc |
819 |
Q |
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| T |
33880720 |
tccatatattaacttgactttatttacctctccacttatcttcaaattactcaaactcgataaataaaaaaaataaaaaataaacagcacatccttagtc |
33880621 |
T |
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| Q |
820 |
tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacaccctccgtttgtcataacgtaacagtgt-aattttac |
918 |
Q |
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| T |
33880620 |
tcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatccaacactctccgtttgtcataacgtaacagtgtaaattttac |
33880521 |
T |
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| Q |
919 |
-agaatccaa-ttagctattttttattttaaatatttcgacactaataatatcacttcacattta |
981 |
Q |
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| T |
33880520 |
aaggatccaagttagctattttttattttaaatatttcaaca--actaatatcacttcacattta |
33880458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 33881526 - 33881331
Alignment:
| Q |
8 |
cttactacaaagataataaataattaaacagtattatgaaaaatttgattactttggttttaatactaaaacaatagatattagccattcaataaaatat |
107 |
Q |
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| T |
33881526 |
cttactatgaagataataaataattaaacaatattatgaaaaatttgattactttggttttaatactaaaacaatagatattagccattcaataaaatat |
33881427 |
T |
|
| Q |
108 |
gtctaagacaacacaaataagggaaaatttgaaattaaattgacatctctcaatttaaccggacaaaatacaattatttggttgatcctcttattc |
203 |
Q |
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| T |
33881426 |
gtctaagacaacacaaagaagggaaaatttgaaattaaattgacatcactcaatttaaccggacaaaatacaattatttggttgatcctcttattc |
33881331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 255 - 420
Target Start/End: Complemental strand, 33881279 - 33881114
Alignment:
| Q |
255 |
aagtagcctcgtgtgttagaaattaacatttttaagattaataaataagatgtttagggttcaaattctgacaagtgtatatattaaacaatatctctac |
354 |
Q |
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||||||||||||||||||||||| |||||||| ||||| ||||| | |||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
33881279 |
aagtagcctcgtgtgttagaaatgaacattttaaagatgaataagtgagatgtttagggttcaaactccgacaagtgtatatattaaacaatatctctac |
33881180 |
T |
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| Q |
355 |
caacagagttaaattaatgatgacatttctttgatgtttctacatggattgtggaagaaaagattt |
420 |
Q |
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| T |
33881179 |
caattgaattaaattgatgatgacatttctttgatgtttctacatggattgtggaaggaaagattt |
33881114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 796 - 877
Target Start/End: Complemental strand, 33876080 - 33875999
Alignment:
| Q |
796 |
aaaataaacagcacatccttagtctcttctaaaacttataagtgacacaatgttacaaacgcggatttttgtccacaaaatc |
877 |
Q |
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| T |
33876080 |
aaaaaaaatagcacatccttagcgtcttctaaaacttactagtgacacaaagttcaaaacgcagattttggtctacaaaatc |
33875999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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