View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-10 (Length: 650)
Name: NF0175-Insertion-10
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Complemental strand, 40121 - 39494
Alignment:
| Q |
8 |
gcaattaggttagccaatcaagtcaaggtcttcctgcagctcttcttcgactttcttatacagaattagtagggcacttagacccttcaacaaagacatc |
107 |
Q |
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| T |
40121 |
gcaattaggttagccaatcaagccaaggtcttcctgcagctcttcttcgactttcttatacagaattagtagggcacttagacccttcaacaaagacatc |
40022 |
T |
|
| Q |
108 |
ttcgaaaatgggtcaaaacactttgatcaacttcaaatcatgcttctcctcatactcgaattttcaacctcaatgaagcttcatagcaaagtcgtggaaa |
207 |
Q |
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| T |
40021 |
ttcgaaaatgggtcaaaacactttgatcaacttcaaatcatgcttctcctcatactcgaattttcaatctcaatgaagcttcatagcaaattcgtggaaa |
39922 |
T |
|
| Q |
208 |
atttcttcgtcgcgagtaattcaaattccaacactgagaaataaaccaagtaagcaacacgacaaaatattctaccgagatgtcaatatgagttgtagcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39921 |
atttcttcgtcgcgagtaattcaaattccaacactgagaaataaaccaagtaagcaacacgacaaaatattctaccgagatgtc--tatgagttgtagcc |
39824 |
T |
|
| Q |
308 |
cgtgcatcaatctggccaaatccacaagtttgttaggttggaaaaatgtcccctaccgtctaattgatggatgaaactcggcgtattgaaggaaccaagt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823 |
cgtgcatcaatctggccaaatccacaagtttgttaggttggaaaaatgtcccctaccgtctaattgatggatgaaactcggcgtattgaaggaaccaagt |
39724 |
T |
|
| Q |
408 |
catcagaagcaccacatttactccctaacacgtcattagggtttgaggtttccacagtcgtttctggttttggaacatcttccgtaggcatgacagtggt |
507 |
Q |
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| T |
39723 |
catcagaagcaccacatttactccctaacacgtcattagggtttgaggtttccacagtcgtttctggttttggaacatcttccgtaggcatgacagtgga |
39624 |
T |
|
| Q |
508 |
aataggtaaatcagtattcactttctgcaaaaacatatcccatttaagtgagttactttagcaaaatatatgaatgtaactttaatatcagtatagttta |
607 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39623 |
aataggcaaatcagtattcactttctgcaaaaacatatcccatttaagtgagttactttagcaaaatatatgaatgtaactttaatatcagtatagttta |
39524 |
T |
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| Q |
608 |
agtaataactaataacttcatcatccagag |
637 |
Q |
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| T |
39523 |
agtaataactaataacttcatcatgcagag |
39494 |
T |
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