View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0175-Insertion-11 (Length: 441)

Name: NF0175-Insertion-11
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0175-Insertion-11
NF0175-Insertion-11
[»] chr2 (9 HSPs)
chr2 (3-216)||(2694595-2694808)
chr2 (213-319)||(2694205-2694311)
chr2 (8-139)||(31330575-31330719)
chr2 (8-139)||(31337296-31337440)
chr2 (307-355)||(2395-2444)
chr2 (307-355)||(21314493-21314542)
chr2 (307-355)||(21334280-21334329)
chr2 (154-191)||(31316315-31316352)
chr2 (46-74)||(8032255-8032283)
[»] chr8 (5 HSPs)
chr8 (3-216)||(5559161-5559374)
chr8 (213-319)||(5559661-5559767)
chr8 (109-139)||(34150019-34150049)
chr8 (154-183)||(34149971-34150000)
chr8 (16-52)||(25637223-25637259)
[»] chr3 (3 HSPs)
chr3 (3-216)||(19357822-19358035)
chr3 (213-319)||(19357427-19357533)
chr3 (154-191)||(18112765-18112802)
[»] chr5 (7 HSPs)
chr5 (3-212)||(37367573-37367782)
chr5 (3-216)||(41529790-41530003)
chr5 (213-320)||(41530296-41530403)
chr5 (213-299)||(37366673-37366759)
chr5 (213-307)||(23880100-23880194)
chr5 (319-354)||(22241549-22241584)
chr5 (319-354)||(22242545-22242580)
[»] chr7 (5 HSPs)
chr7 (70-195)||(34455225-34455350)
chr7 (16-76)||(4342667-4342727)
chr7 (221-319)||(19804311-19804411)
chr7 (225-303)||(3076926-3077004)
chr7 (319-355)||(11085914-11085950)
[»] scaffold0158 (1 HSPs)
scaffold0158 (221-355)||(12251-12387)
[»] chr6 (3 HSPs)
chr6 (213-319)||(5248134-5248240)
chr6 (314-362)||(5244714-5244763)
chr6 (221-319)||(28146795-28146897)
[»] scaffold0060 (1 HSPs)
scaffold0060 (213-355)||(38826-38969)
[»] chr4 (4 HSPs)
chr4 (94-139)||(31662699-31662744)
chr4 (222-319)||(5573507-5573605)
chr4 (221-320)||(1507922-1508021)
chr4 (240-317)||(4222416-4222492)
[»] scaffold0290 (1 HSPs)
scaffold0290 (307-355)||(4090-4139)
[»] scaffold0439 (1 HSPs)
scaffold0439 (319-354)||(12784-12819)
[»] chr1 (1 HSPs)
chr1 (321-359)||(9190186-9190226)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 2694808 - 2694595
Alignment:
Q  3 caacatatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2694808 caacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 2694709  T
Q  103 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2694708 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 2694609  T
Q  203 tttctacaacatga 216  Q
    ||||||||||||||    
T  2694608 tttctacaacatga 2694595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 2694311 - 2694205
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||     
T  2694311 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatgctgaatttttacatgcgggg 2694212  T
Q  313 tattaca 319  Q
    |||||||    
T  2694211 tattaca 2694205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 31330719 - 31330575
Alignment:
Q  8 tatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat---------- 97  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31330719 tatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaa 31330620  T
Q  98 ---tcagcccctgcctcaatcttcttgccaagccaaaccctagct 139  Q
       |||||||||||||| |||||||||||||||||||||||||||    
T  31330619 cattcagcccctgcctctatcttcttgccaagccaaaccctagct 31330575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 31337440 - 31337296
Alignment:
Q  8 tatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat---------- 97  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31337440 tatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagtttcaa 31337341  T
Q  98 ---tcagcccctgcctcaatcttcttgccaagccaaaccctagct 139  Q
       |||||||||||||| |||||||||||||||||||||||||||    
T  31337340 cattcagcccctgcctctatcttcttgccaagccaaaccctagct 31337296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 2444 - 2395
Alignment:
Q  307 gtgggttattacactctaccccc-ttaaagaaatttcgtcctcgaaattt 355  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  2444 gtgggatattacactctaccccccttaaagaaatttcgtcctcgaaattt 2395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 21314542 - 21314493
Alignment:
Q  307 gtgggttattacactctaccccc-ttaaagaaatttcgtcctcgaaattt 355  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  21314542 gtgggatattacactctacccccattaaagaaatttcgtcctcgaaattt 21314493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 21334329 - 21334280
Alignment:
Q  307 gtgggttattacactctaccccc-ttaaagaaatttcgtcctcgaaattt 355  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  21334329 gtgggatattacactctacccccattaaagaaatttcgtcctcgaaattt 21334280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 31316315 - 31316352
Alignment:
Q  154 tcttgctcaagcttgcctctaatgctcaaaacacaaca 191  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31316315 tcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 8032283 - 8032255
Alignment:
Q  46 caaaataatcacttttacctcaatttaag 74  Q
    |||||||||||||||||||||||||||||    
T  8032283 caaaataatcacttttacctcaatttaag 8032255  T

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Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 5559161 - 5559374
Alignment:
Q  3 caacatatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5559161 caacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 5559260  T
Q  103 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5559261 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcact 5559360  T
Q  203 tttctacaacatga 216  Q
    ||||||||||||||    
T  5559361 tttctacaacatga 5559374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 5559661 - 5559767
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5559661 atgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttacatgcgggt 5559760  T
Q  313 tattaca 319  Q
    |||||||    
T  5559761 tattaca 5559767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 34150049 - 34150019
Alignment:
Q  109 ctcaatcttcttgccaagccaaaccctagct 139  Q
    |||||||||||||||||||||||||||||||    
T  34150049 ctcaatcttcttgccaagccaaaccctagct 34150019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 34150000 - 34149971
Alignment:
Q  154 tcttgctcaagcttgcctctaatgctcaaa 183  Q
    ||||||||||||||||||||||||||||||    
T  34150000 tcttgctcaagcttgcctctaatgctcaaa 34149971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 25637259 - 25637223
Alignment:
Q  16 taatcaatcaacataacttgaatttcttctcaaaata 52  Q
    |||| |||||||||||||| |||||||||||||||||    
T  25637259 taattaatcaacataacttaaatttcttctcaaaata 25637223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 19358035 - 19357822
Alignment:
Q  3 caacatatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19358035 caacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 19357936  T
Q  103 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19357935 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcact 19357836  T
Q  203 tttctacaacatga 216  Q
    ||||||||||||||    
T  19357835 tttctacaacatga 19357822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 19357533 - 19357427
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19357533 atgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttacatgcgggt 19357434  T
Q  313 tattaca 319  Q
    |||||||    
T  19357433 tattaca 19357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 18112765 - 18112802
Alignment:
Q  154 tcttgctcaagcttgcctctaatgctcaaaacacaaca 191  Q
    |||||||||| |||||||||||||||||||||||||||    
T  18112765 tcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 37367782 - 37367573
Alignment:
Q  3 caacatatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 102  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37367782 caacttatacatctaatcaatcaacataacttgaattgcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 37367683  T
Q  103 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37367682 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 37367583  T
Q  203 tttctacaac 212  Q
    ||||||||||    
T  37367582 tttctacaac 37367573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 41529790 - 41530003
Alignment:
Q  3 caacatatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 102  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41529790 caacttatacatctaatcaatcaacataacttgaatttcttcccaaaataatcacttttacctcaatttaagctattaatcacttatacttacattcagc 41529889  T
Q  103 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaatgctcaaaacacaacacaaaaatcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41529890 ccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgcctctaacgctcaaaacacaacacaaaaatcact 41529989  T
Q  203 tttctacaacatga 216  Q
    ||||||||||||||    
T  41529990 tttctacaacatga 41530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 41530296 - 41530403
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  41530296 atgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataattgatactgaatttttacatgcgggt 41530395  T
Q  313 tattacac 320  Q
    ||||||||    
T  41530396 tattacac 41530403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 37366759 - 37366673
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatt 299  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37366759 atgattcgatcctgaaaagttttgtgaacaattaccattttgtctttctcttaaattttccaatgataaaataactgatactgaatt 37366673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 23880194 - 23880100
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatg 307  Q
    ||||| |||| || |||||| || || | |||||||||| || | ||||||||||  |||||| |||| ||||||||||||| ||||||||||||    
T  23880194 atgatacggttcttaaaagtcttatgcaaaattaccattatgcctttctcttaaaaattccaaggatataataactgatacttaatttttatatg 23880100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Complemental strand, 22241584 - 22241549
Alignment:
Q  319 actctacccccttaaagaaatttcgtcctcgaaatt 354  Q
    |||||||||||||||| |||||||||||||||||||    
T  22241584 actctacccccttaaaaaaatttcgtcctcgaaatt 22241549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Complemental strand, 22242580 - 22242545
Alignment:
Q  319 actctacccccttaaagaaatttcgtcctcgaaatt 354  Q
    |||||||||||||||| |||||||||||||||||||    
T  22242580 actctacccccttaaaaaaatttcgtcctcgaaatt 22242545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 34455350 - 34455225
Alignment:
Q  70 ttaagctattaatcacttatacttacattcagcccctgcctcaatcttcttgccaagccaaaccctagcttcaatattcttgtttcttgctcaagcttgc 169  Q
    ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  34455350 ttaagctatgaatcacttatacttacagtcagcccttgcttcaatcttcttgccaagccaaaccctagcttcaatatccttgtttcttgctcaagcttat 34455251  T
Q  170 ctctaatgctcaaaacacaacacaaa 195  Q
    ||||||||||  ||||||||||||||    
T  34455250 ctctaatgcttcaaacacaacacaaa 34455225  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 4342667 - 4342727
Alignment:
Q  16 taatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagct 76  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  4342667 taattaatcaacataacttaaatttcttctcaaaataagcacttttacctcaattttagct 4342727  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 19804311 - 19804411
Alignment:
Q  221 gtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaatt--ttccaatgataaaataactgatactgaatttttatatgtgggttattac 318  Q
    |||||||||||| || || |||||||||||||||||  || || |||    |||||| ||||||||||||||||||||||||||| ||| ||| ||||||    
T  19804311 gtcctgaaaagtcttatgcacaattaccattttgtctgtccctaaaaaaaattccaaagataaaataactgatactgaatttttacatgcggggtattac 19804410  T
Q  319 a 319  Q
    |    
T  19804411 a 19804411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 3077004 - 3076926
Alignment:
Q  225 tgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaattttta 303  Q
    |||||||| || || ||||||||||||||| ||||||||| ||  ||  || |||| ||||||||||| ||||||||||    
T  3077004 tgaaaagtcttatgcacaattaccattttgcccttctcttgaaaattttaaagatagaataactgatattgaattttta 3076926  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 11085914 - 11085950
Alignment:
Q  319 actctacccccttaaagaaatttcgtcctcgaaattt 355  Q
    ||||||||||||||||  |||||||||||||||||||    
T  11085914 actctacccccttaaaagaatttcgtcctcgaaattt 11085950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 12387 - 12251
Alignment:
Q  221 gtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaatt--ttccaatgataaaataactgatactgaatttttatatgtgggttattac 318  Q
    |||||||||||| || || |||||||||||||||||| || |  |||    |||||| ||||||||||||||||||||||||||| ||  ||| ||||||    
T  12387 gtcctgaaaagtcttatgcacaattaccattttgtccgtcccaaaaaaaaattccaaagataaaataactgatactgaatttttacatacggggtattac 12288  T
Q  319 actctacccccttaaagaaatttcgtcctcgaaattt 355  Q
    | |||||||||||||  |||||||||||| |||||||    
T  12287 attctacccccttaagaaaatttcgtccttgaaattt 12251  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 5248240 - 5248134
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    |||||| ||||||| | ||| || || |||||||||||| || |||| |||||||  ||||||||||  ||||||||||||||||||||||||||| ||     
T  5248240 atgatttggtcctgcacagtcttatgcacaattaccattatgcccttttcttaaaaattccaatgattgaataactgatactgaatttttatatgtcgga 5248141  T
Q  313 tattaca 319  Q
    |||||||    
T  5248140 tattaca 5248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 5244763 - 5244714
Alignment:
Q  314 attacactctacc-cccttaaagaaatttcgtcctcgaaattttagggat 362  Q
    |||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  5244763 attacattctacctcccttaaagaaatttcgtcctcaaaattttagggat 5244714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 28146795 - 28146897
Alignment:
Q  221 gtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaatt----ttccaatgataaaataactgatactgaatttttatatgtgggttatt 316  Q
    |||||||||||| || || ||||||||||||||||||||| || |||      || ||| | ||||||||||||||||||||||||| ||| ||| ||||    
T  28146795 gtcctgaaaagtcttatgcacaattaccattttgtccttccctgaaaaaaagatttcaaagttaaaataactgatactgaatttttacatgcgggatatt 28146894  T
Q  317 aca 319  Q
    |||    
T  28146895 aca 28146897  T

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Target: scaffold0060 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 38969 - 38826
Alignment:
Q  213 atgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggt 312  Q
    |||||| ||||| ||||| | || ||| |||| ||| ||||  |||||||||||| |||  || |||||||||||| ||||||||| |||| ||| |||     
T  38969 atgatttggtccggaaaattcttatgagcaatcacctttttacccttctcttaaaatttttaaagataaaataactaatactgaatctttacatgcggga 38870  T
Q  313 tattacactcta-cccccttaaagaaatttcgtcctcgaaattt 355  Q
    ||||||| |||| || |||||||||||||||| |||| ||||||    
T  38869 tattacattctatccaccttaaagaaatttcgacctcaaaattt 38826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 31662744 - 31662699
Alignment:
Q  94 acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  31662744 acattcagcccctgcctctatcttcttgccaagccaaaccctagct 31662699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 319
Target Start/End: Complemental strand, 5573605 - 5573507
Alignment:
Q  222 tcctgaaaagttttgtgaacaattaccattttgtccttctct-taaattttccaatgataaaataactgatactgaatttttatatgtgggttattaca 319  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||  |||  ||| || |||||||||||||||| |||| ||||| ||| ||| |||||||    
T  5573605 tcctgaaaagtcttgtgcacaattaccattttgtccttccctaaaaaaattcaaaagataaaataactgatattgaacttttacatgcggggtattaca 5573507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 1507922 - 1508021
Alignment:
Q  221 gtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaatt-ttccaatgataaaataactgatactgaatttttatatgtgggttattaca 319  Q
    |||| ||||||| || || ||||||||||||| ||||||| || |||   |||||| |||||||||||| |||||||||||||| ||| ||| |||||||    
T  1507922 gtcccgaaaagtcttatgcacaattaccattt-gtccttccctaaaaaaattccaaagataaaataacttatactgaatttttacatgcggggtattaca 1508020  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 4222416 - 4222492
Alignment:
Q  240 acaattaccattttgtccttctcttaaattttccaatgataaaataactgatactgaatttttatatgtgggttatta 317  Q
    ||||||||||||| ||||||| || |||  |||||| |||||||||||| ||||| |||||||| ||| ||| |||||    
T  4222416 acaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactaaatttttacatgcggggtatta 4222492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 4139 - 4090
Alignment:
Q  307 gtgggttattacactctaccccc-ttaaagaaatttcgtcctcgaaattt 355  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  4139 gtgggatattacactctaccccccttaaagaaatttcgtcctcaaaattt 4090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 12784 - 12819
Alignment:
Q  319 actctacccccttaaagaaatttcgtcctcgaaatt 354  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12784 actctacccccttaaaggaatttcgtcctcgaaatt 12819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 9190226 - 9190186
Alignment:
Q  321 tctacccccttaaaga--aatttcgtcctcgaaattttagg 359  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  9190226 tctacccccttaaagatgaatttcgtcctcgaaattttagg 9190186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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