View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0175-Insertion-12 (Length: 575)

Name: NF0175-Insertion-12
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0175-Insertion-12
NF0175-Insertion-12
[»] chr1 (20 HSPs)
chr1 (296-575)||(32971601-32971881)
chr1 (117-187)||(29359851-29359921)
chr1 (117-188)||(34817938-34818009)
chr1 (117-177)||(29877415-29877475)
chr1 (68-110)||(32971567-32971609)
chr1 (119-177)||(49020301-49020359)
chr1 (134-188)||(49570103-49570157)
chr1 (251-299)||(16263421-16263469)
chr1 (117-177)||(30519518-30519578)
chr1 (251-299)||(46281432-46281480)
chr1 (7-57)||(32971504-32971551)
chr1 (110-177)||(33076237-33076304)
chr1 (251-302)||(49569989-49570040)
chr1 (151-188)||(36750412-36750449)
chr1 (251-292)||(44723363-44723404)
chr1 (116-181)||(49931667-49931732)
chr1 (251-295)||(740983-741027)
chr1 (151-187)||(23665653-23665689)
chr1 (257-305)||(38019537-38019585)
chr1 (251-299)||(49020431-49020479)
[»] chr3 (18 HSPs)
chr3 (108-188)||(36755935-36756015)
chr3 (117-188)||(33796373-33796444)
chr3 (117-188)||(1436923-1436994)
chr3 (117-188)||(51698965-51699036)
chr3 (117-188)||(54099250-54099321)
chr3 (118-188)||(47742389-47742459)
chr3 (251-296)||(51137063-51137108)
chr3 (108-181)||(52485586-52485659)
chr3 (251-295)||(49021711-49021755)
chr3 (117-179)||(29781013-29781075)
chr3 (251-296)||(48352995-48353040)
chr3 (151-188)||(49021818-49021855)
chr3 (116-177)||(52100378-52100439)
chr3 (151-188)||(52714840-52714877)
chr3 (251-295)||(37894270-37894314)
chr3 (117-181)||(43720492-43720556)
chr3 (253-297)||(52714731-52714775)
chr3 (251-295)||(54099384-54099428)
[»] chr8 (17 HSPs)
chr8 (117-188)||(35067267-35067338)
chr8 (117-187)||(41639691-41639761)
chr8 (108-177)||(39453201-39453270)
chr8 (117-177)||(45405649-45405709)
chr8 (117-181)||(6440195-6440259)
chr8 (251-304)||(42620004-42620057)
chr8 (251-295)||(5574266-5574310)
chr8 (117-181)||(5574369-5574433)
chr8 (150-188)||(42619907-42619945)
chr8 (151-188)||(6972261-6972298)
chr8 (116-181)||(12656036-12656101)
chr8 (251-296)||(25830273-25830318)
chr8 (251-295)||(67188-67232)
chr8 (117-177)||(3413086-3413146)
chr8 (256-296)||(10344323-10344363)
chr8 (251-295)||(13970919-13970963)
chr8 (251-295)||(43285990-43286034)
[»] chr5 (15 HSPs)
chr5 (117-188)||(16690606-16690677)
chr5 (117-188)||(38493732-38493803)
chr5 (116-181)||(22098369-22098434)
chr5 (117-188)||(884548-884619)
chr5 (132-181)||(26686992-26687041)
chr5 (132-181)||(26956723-26956772)
chr5 (119-180)||(34940748-34940809)
chr5 (117-188)||(9168061-9168131)
chr5 (251-298)||(22098252-22098299)
chr5 (253-295)||(38493625-38493666)
chr5 (251-300)||(14321982-14322031)
chr5 (132-181)||(29687191-29687240)
chr5 (251-295)||(4088443-4088487)
chr5 (251-295)||(10659100-10659144)
chr5 (251-299)||(40829410-40829458)
[»] chr2 (16 HSPs)
chr2 (117-188)||(19843591-19843662)
chr2 (117-191)||(7084608-7084682)
chr2 (117-187)||(26290744-26290814)
chr2 (108-181)||(43658596-43658669)
chr2 (108-188)||(21738502-21738582)
chr2 (118-181)||(39309523-39309586)
chr2 (117-177)||(12070965-12071025)
chr2 (109-177)||(14328499-14328567)
chr2 (151-191)||(33616571-33616611)
chr2 (151-188)||(6336357-6336394)
chr2 (104-181)||(29449325-29449401)
chr2 (251-295)||(6336252-6336296)
chr2 (251-295)||(19843484-19843528)
chr2 (253-297)||(21738645-21738689)
chr2 (251-295)||(24766152-24766196)
chr2 (151-191)||(45259216-45259256)
[»] scaffold0662 (2 HSPs)
scaffold0662 (117-188)||(1251-1322)
scaffold0662 (251-295)||(1146-1190)
[»] chr4 (14 HSPs)
chr4 (117-188)||(47015112-47015183)
chr4 (253-295)||(34757928-34757970)
chr4 (253-295)||(34759202-34759244)
chr4 (108-177)||(16019594-16019663)
chr4 (108-177)||(34757793-34757862)
chr4 (108-177)||(34759067-34759136)
chr4 (117-177)||(15522472-15522532)
chr4 (106-181)||(36123343-36123417)
chr4 (251-295)||(20760255-20760299)
chr4 (251-295)||(20766646-20766690)
chr4 (251-295)||(37514159-37514203)
chr4 (251-295)||(42815404-42815448)
chr4 (129-181)||(46665100-46665152)
chr4 (251-295)||(47015007-47015051)
[»] chr7 (12 HSPs)
chr7 (117-177)||(35822868-35822928)
chr7 (106-177)||(41430034-41430105)
chr7 (150-191)||(47012496-47012537)
chr7 (117-177)||(42584920-42584980)
chr7 (251-304)||(23844956-23845008)
chr7 (151-188)||(40854582-40854619)
chr7 (251-296)||(40854682-40854727)
chr7 (120-177)||(44496699-44496756)
chr7 (251-299)||(22638911-22638959)
chr7 (117-177)||(34507099-34507159)
chr7 (251-295)||(47012597-47012641)
chr7 (151-191)||(47954029-47954069)
[»] chr6 (3 HSPs)
chr6 (116-191)||(33651124-33651199)
chr6 (116-177)||(27612992-27613053)
chr6 (251-300)||(33651015-33651064)
[»] scaffold0016 (1 HSPs)
scaffold0016 (255-295)||(204476-204516)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 296 - 575
Target Start/End: Original strand, 32971601 - 32971881
Alignment:
Q  296 atttataaatgtgtagtatagatacataacattaaatttaagtagtagagagaagagtgtagaactctcggcttttaagtgtgtaaaattatctcacaat 395  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32971601 atttataaatgtgtggtatagatacataacattaaatttaagtagtagagagaagagtgtagaactctcggcttttaagtgtgtaaaattatctcataat 32971700  T
Q  396 gtatgtataactgtcctttggaccctatgaatgaaggaaagcttatcattcgtaaactagacaagtaaaagg-nnnnnnnnnnnngtgatgataaacaag 494  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||| ||||||||||    
T  32971701 gtatgtataactctcctttggaccctatgaatgaaggaaagcttatcattcgtaaactagacaagtaaaaggaaaaaaaaaaaaaatga-gataaacaag 32971799  T
Q  495 tnnnnnnnntataaagtattttgtcaaata-tatctcctcctaaattcctctcaaaatctcactaataaccttcttatttct 575  Q
    |        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32971800 taaaaaaaatataaagtattttgtcaaatactatctcctcctaaattcctctcaaaatctcactaataaccttcttatttct 32971881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 29359921 - 29359851
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 187  Q
    ||||||||||| |||||||||||||| || |||||||||||| ||||||||| |||||||||||| |||||    
T  29359921 tgttatttgaacatcaatttgattgacaaccacattgacaaccatatttttataaagaaaagtatgtgttg 29359851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 34817938 - 34818009
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||  |||| ||||| ||||||||| |||||||||||||||||| ||| ||||||    
T  34817938 tgttatttgaacatcaatttagttgacaatcatattgacaaccatatttttacaaagaaaaatatgtgttgg 34818009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 29877475 - 29877415
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||||| ||||| ||||| || |||||| ||||||||||||||||||    
T  29877475 tgttatttgaacatcaattttattgacaatcatatggacaaccatatttttacaaagaaaa 29877415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 32971567 - 32971609
Alignment:
Q  68 ttgctagtccatagaaagtatcagagagatgtagatttataaa 110  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  32971567 ttgctagtccaaagaaagtatcggagagatgtagatttataaa 32971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 49020301 - 49020359
Alignment:
Q  119 ttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||| ||||||||| |||| || || ||||||||| ||||||||||||||||||    
T  49020301 ttatttgaacatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaa 49020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 49570157 - 49570103
Alignment:
Q  134 tttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  49570157 tttggttgacaatcacattgacaaccatatttttataaagaaaagtatgtgttgg 49570103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 16263469 - 16263421
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 299  Q
    ||||| ||||||| ||||||||||  |||||||||||||||||||||||    
T  16263469 tgtcataaaagttgttagaaaataattgtacaaatatcatttctcattt 16263421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 30519518 - 30519578
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  30519518 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 30519578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 46281480 - 46281432
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 299  Q
    |||||||||| |||||| ||||||  |||||||||||||||||||||||    
T  46281480 tgtcacaaaaattattacaaaatagttgtacaaatatcatttctcattt 46281432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 32971504 - 32971551
Alignment:
Q  7 actaatcaattgttaggtctattttggttttaagtgcaatatagtcctcct 57  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  32971504 actaatcaattgttaggtctattttgg-tttaagtgc--tatagtcctcct 32971551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 33076304 - 33076237
Alignment:
Q  110 agagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||| |||||||||||| ||||||||| |||||||| | || |||||| | | ||||||||||||||    
T  33076304 agagcagtgttatttgaacatcaatttgcttgataattaaatggacaaccacaattttacaaagaaaa 33076237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 49570040 - 49569989
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttata 302  Q
    ||||||||||||| |||| ||||  |||||||||||||||||||||| ||||    
T  49570040 tgtcacaaaagttgttaggaaatggatgtacaaatatcatttctcatatata 49569989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 36750412 - 36750449
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  36750412 ttgacaaccatatttttacaaagaaaagtatgtgttgg 36750449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 44723404 - 44723363
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcattt 292  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  44723404 tgtcacaaaaattattataaaataaatgtacaaatatcattt 44723363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 49931732 - 49931667
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||||||||| ||||||||| |||||||  | || |||||| | |||||| |||||||||||||    
T  49931732 gtgttatttgaacatcaatttgcttgataactaaatggacaaccacatttttccaaagaaaagtat 49931667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 740983 - 741027
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||||||||||  |||| ||||||||||||||    
T  740983 tgtcacaaaagttgttagaaaatagttgtataaatatcatttctc 741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 23665653 - 23665689
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttg 187  Q
    |||||||| |||||||||||||||||||||| |||||    
T  23665653 ttgacaaccatatttttacaaagaaaagtatgtgttg 23665689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 38019537 - 38019585
Alignment:
Q  257 aaaagttattagaaaatatatgtacaaatatcatttctcatttataaat 305  Q
    ||||||||| | ||||||  | |||||||||||||||||||||||||||    
T  38019537 aaaagttatcacaaaataattatacaaatatcatttctcatttataaat 38019585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 49020431 - 49020479
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 299  Q
    ||||||||||||| ||| |||||   |||||||||||||||||||||||    
T  49020431 tgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctcattt 49020479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 36755935 - 36756015
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||  ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  36755935 aaagagcaatgttatttgaatatcaatttgattgacaatcacattgacaaccatatttttacaaagaaaagtatatgttgg 36756015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 33796444 - 33796373
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  33796444 tgttatttgaaaatcaatttggttgacaatcacattgacaaccatatttttataaagaaaagtatgtgttgg 33796373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 1436994 - 1436923
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| || | || |||||||||||| |||||||||||||||||||||| ||||||    
T  1436994 tgttatttgaacatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 1436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 51699036 - 51698965
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  51699036 tgttatttgaacatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgtgttgg 51698965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 54099250 - 54099321
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| ||| ||||||||||  |||||||||||||||||||||| ||||||    
T  54099250 tgttatttgaacatcaatttggttgacaattacattgacaatcatatttttacaaagaaaagtatatgttgg 54099321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 47742459 - 47742389
Alignment:
Q  118 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||||| | ||||||| |||| || |||||| |||||||||||||||| |||| |||||| ||||||    
T  47742459 gttatttgaacagcaatttggttgacaaccacattaacaactatatttttacgaagagaagtatgtgttgg 47742389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 51137063 - 51137108
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 296  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  51137063 tgtcacaaaagttattaaaaaatagttgtacaaatatcatttctca 51137108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 52485659 - 52485586
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||| ||||||||||||| ||| ||||| |||| || |  || |||||| ||||||||||||||||||||||    
T  52485659 aaagagttgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtat 52485586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 49021755 - 49021711
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||    
T  49021755 tgtcacaaaagttattaaaaaatggatgtacaaatatcatttctc 49021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 29781075 - 29781013
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagt 179  Q
    ||||||||| | |||||||||||||| ||||| || |||||  ||||||||| ||||||||||    
T  29781075 tgttatttggacatcaatttgattgacaatcatatggacaatcatatttttataaagaaaagt 29781013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 48353040 - 48352995
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 296  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||    
T  48353040 tgtcacaaaagttgttaaaaaatggatgtacaaatatcatttctca 48352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 49021855 - 49021818
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  49021855 ttgacaaccatatttttacaaagaaaagtatgtgttgg 49021818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 52100439 - 52100378
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||||||| ||||||||| |||| ||| | || |||||  ||||||||||||||||||    
T  52100439 gtgttatttgaacatcaatttgcttgacaattaaatggacaatcatatttttacaaagaaaa 52100378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 52714877 - 52714840
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  52714877 ttgacaaccatatttttacaaagaaaagtatgtgttgg 52714840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 37894270 - 37894314
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  37894270 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 37894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 43720556 - 43720492
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||| |||||| || |||||| |||| || |||||||||||  ||||||||| ||||||||||||    
T  43720556 tgttctttgaacattaatttggttgacaaccacattgacaatcatatttttataaagaaaagtat 43720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 52714775 - 52714731
Alignment:
Q  253 tcacaaaagttattagaaaatatatgtacaaatatcatttctcat 297  Q
    |||||||| || |||||||||  ||||||||||||||||||||||    
T  52714775 tcacaaaaattgttagaaaatggatgtacaaatatcatttctcat 52714731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 54099384 - 54099428
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||    
T  54099384 tgtcacaaaagttgttagaaaatggatgtacaaatattatttctc 54099428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 35067338 - 35067267
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||    
T  35067338 tgttatttgaacatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 35067267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 41639691 - 41639761
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 187  Q
    ||||||||||| ||||||||| |||| || ||| |||||||| |||||||||||||||||||||| |||||    
T  41639691 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaagtatgtgttg 41639761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 39453201 - 39453270
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||  ||||||||||| |||||||||||||| || |||||||||||  ||||||||||||||||||    
T  39453201 aaagagcaatgttatttgaacatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaa 39453270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 45405709 - 45405649
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  45405709 tgttatttgaacatcaatgtgattgacaaccacatggacaactatatttttacaaagaaaa 45405649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 6440259 - 6440195
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||||| ||||| ||| |||| || || ||||||||| ||||||||||||||||||||||    
T  6440259 tgttatttgaacatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtat 6440195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 42620004 - 42620057
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttataaa 304  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||  |||||||    
T  42620004 tgtcacaaaagttgttagaaaatggatgtacaaatatcatttctctattataaa 42620057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 5574310 - 5574266
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  5574310 tgtcacaaaaattgttagaaaatatatatacaaatatcatttctc 5574266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 5574433 - 5574369
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||||| ||||||||| |||| ||  | ||||||| | ||||||||||||||||||||||    
T  5574433 tgttatttgaacatcaatttggttgacaactatattgacacccatatttttacaaagaaaagtat 5574369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 42619907 - 42619945
Alignment:
Q  150 attgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  42619907 attgacaaccatatttttacaaagaaaagtatgtgttgg 42619945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 6972298 - 6972261
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  6972298 ttgacaaccatatttttacaaagaaaagtatgtgttgg 6972261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 12656101 - 12656036
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||||||||| ||| ||||| |||| || || || |||||| || |||||||||||||||||||    
T  12656101 gtgttatttgaacatctatttgcttgacaaccaaatagacaaccatgtttttacaaagaaaagtat 12656036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 25830273 - 25830318
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 296  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||    
T  25830273 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctca 25830318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 67188 - 67232
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  67188 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 67232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 3413086 - 3413146
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| ||||||||| |||| ||  |||||||||   ||||||||||||||||||    
T  3413086 tgttatttgaacatcaatttggttgacaacaacattgacagtcatatttttacaaagaaaa 3413146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 10344363 - 10344323
Alignment:
Q  256 caaaagttattagaaaatatatgtacaaatatcatttctca 296  Q
    ||||| |||||| |||||| |||||||||||||||||||||    
T  10344363 caaaaattattataaaatagatgtacaaatatcatttctca 10344323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 13970963 - 13970919
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||| ||||  ||||||||||||||||||||    
T  13970963 tgtcacaaaagttgttaggaaatggatgtacaaatatcatttctc 13970919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 43285990 - 43286034
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    |||||||||||||||||||||||   ||| |||||||||||||||    
T  43285990 tgtcacaaaagttattagaaaatggttgtccaaatatcatttctc 43286034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 16690677 - 16690606
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||    
T  16690677 tgttatttgaatatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 16690606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 38493803 - 38493732
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| || |||||||||| | ||||||| |||||||||||||| ||||||    
T  38493803 tgttatttgaacatcaatttggttgacaaccacattgacacccatattttaacaaagaaaagtatgtgttgg 38493732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 22098434 - 22098369
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||||||||| ||||||||| |||||||| | || |||||| | ||||||||||||||||||||    
T  22098434 gtgttatttgaacatcaatttgcttgataattaaatggacaaccacatttttacaaagaaaagtat 22098369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 884619 - 884548
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||  |||| ||||| ||| ||||| |||||||||||| ||||||||| ||||||    
T  884619 tgttatttgaacatcaatttagttgacaatcatattaacaaccatatttttacaatgaaaagtatgtgttgg 884548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 26687041 - 26686992
Alignment:
Q  132 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  26687041 aatttgattgacaactacattgacaaccatatttttacaaagaaaagtat 26686992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 26956772 - 26956723
Alignment:
Q  132 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  26956772 aatttgattgacaactacattgacaaccatatttttacaaagaaaagtat 26956723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 34940809 - 34940748
Alignment:
Q  119 ttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagta 180  Q
    ||||||||| ||||||||| |||| || |||||||||||  ||||||||| |||||||||||    
T  34940809 ttatttgaacatcaatttggttgacaaccacattgacaatcatatttttataaagaaaagta 34940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 9168061 - 9168131
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| || || ||||||||  ||| |||||||||||||||||| ||||||    
T  9168061 tgttatttgaacatcaatttggttgacaaccatattgacaatcata-ttttacaaagaaaagtatgtgttgg 9168131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 22098299 - 22098252
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatt 298  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  22098299 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctcatt 22098252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 38493666 - 38493625
Alignment:
Q  253 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  38493666 tcacaaaagttattagaaattat-tgtacaaatatcatttctc 38493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 14321982 - 14322031
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattta 300  Q
    ||||||||||||| |||||||||   ||||||||||||||||| ||||||    
T  14321982 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttcccattta 14322031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 29687240 - 29687191
Alignment:
Q  132 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||| ||| ||| | || |||||||||||||||||||||||||||||    
T  29687240 aatttgaatgacaattatatggacaactatatttttacaaagaaaagtat 29687191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 4088487 - 4088443
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  4088487 tgtcacaaaagttgttataaaatggatgtacaaatatcatttctc 4088443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 10659100 - 10659144
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||    
T  10659100 tgtcacaaaagttattaaaaaattaatgttcaaatatcatttctc 10659144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 40829458 - 40829410
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 299  Q
    |||||||||| |||||| |||||   |||||||||||||||||||||||    
T  40829458 tgtcacaaaaattattaaaaaatggttgtacaaatatcatttctcattt 40829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 19843662 - 19843591
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  19843662 tgttatttgaacatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgtgttgg 19843591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 7084608 - 7084682
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    ||||||||||| ||||||||| |||| || |||||||||||  |||||||||||||||||||||| |||||||||    
T  7084608 tgttatttgaacatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaagtatgtgttggtac 7084682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 26290744 - 26290814
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 187  Q
    ||||||||||| ||||||||| |||||||  ||||||||||  |||||||||||||||||| ||| |||||    
T  26290744 tgttatttgaacatcaatttggttgataactacattgacaatcatatttttacaaagaaaaatatgtgttg 26290814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 43658596 - 43658669
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||||  ||||||||||| || |||||| |||| || || |||||||||||| |||||||||||||||||||    
T  43658596 aaagagcaatgttatttgaacattaatttggttgacaaccatattgacaactatttttttacaaagaaaagtat 43658669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 21738502 - 21738582
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||  ||||||||||| ||||||||| |||| ||  ||||||||||  |||||||||||||||||| ||| ||||||    
T  21738502 aaagagcaatgttatttgaacatcaatttggttgacaacgacattgacaatcatatttttacaaagaaaaatatgtgttgg 21738582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 39309586 - 39309523
Alignment:
Q  118 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    |||||||||| ||||||||| |||| ||||| ||||| ||  ||||||||||||||||||||||    
T  39309586 gttatttgaaaatcaatttggttgacaatcatattgataatcatatttttacaaagaaaagtat 39309523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 12071025 - 12070965
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  12071025 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 12070965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 14328567 - 14328499
Alignment:
Q  109 aagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||| |||||||||||| |||| | ||||||| || ||||| ||||| ||||||||||| |||||||    
T  14328567 aagagcagtgttatttgaacatcattgtgattgacaaccacatggacaattatatttttactaagaaaa 14328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 33616611 - 33616571
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  33616611 ttgacaaccatatttttacaaagaaaagtatgtgttggtac 33616571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 6336394 - 6336357
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  6336394 ttgacaaccatatttttacaaagaaaagtatgtgttgg 6336357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 29449401 - 29449325
Alignment:
Q  104 ttataaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||||  |||||||||||| ||| ||||| |||| || || || |||||| || |||||||||||||||||||    
T  29449401 ttataaagagtagtgttatttgaacatctatttgcttgacaaccaaatagacaac-atgtttttacaaagaaaagtat 29449325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 6336296 - 6336252
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  6336296 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 6336252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 19843528 - 19843484
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||||    
T  19843528 tgtcacaaaagttgttaggaaatagatgtacaaatattatttctc 19843484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 21738645 - 21738689
Alignment:
Q  253 tcacaaaagttattagaaaatatatgtacaaatatcatttctcat 297  Q
    |||||||| ||||||||||||   |||||||||||||||||||||    
T  21738645 tcacaaaaattattagaaaatggttgtacaaatatcatttctcat 21738689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 24766196 - 24766152
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||||||| |||||   |||||||||||||||||||    
T  24766196 tgtcacaaaagttattaaaaaatggttgtacaaatatcatttctc 24766152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 45259216 - 45259256
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  45259216 ttgacaaacatatttttacaaagaaaagtatgtgttggtac 45259256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 1322 - 1251
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| |||| |||| |||| || |||||||||||  |||||||||||||||||||||||| ||||    
T  1322 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattgg 1251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 1190 - 1146
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||    
T  1190 tgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 47015183 - 47015112
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    ||||||||||| |||| |||| |||| || |||||||||||  |||||||||||||||||||||||| ||||    
T  47015183 tgttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattgg 47015112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 34757928 - 34757970
Alignment:
Q  253 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34757928 tcacaaaagttattagaaaatagatgtacaaatatcatttctc 34757970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 34759202 - 34759244
Alignment:
Q  253 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34759202 tcacaaaagttattagaaaatagatgtacaaatatcatttctc 34759244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 16019663 - 16019594
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||  ||||||||||| |||||||||||||| || || ||||||||| ||||||||| ||||||||    
T  16019663 aaagagcaatgttatttgaacatcaatttgattgacaagcatattgacaaccatatttttataaagaaaa 16019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 34757793 - 34757862
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||  |||||||| || |||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  34757793 aaagagcaatgttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaa 34757862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 34759067 - 34759136
Alignment:
Q  108 aaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||  |||||||| || |||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  34759067 aaagagcaatgttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaa 34759136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 15522532 - 15522472
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  15522532 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 15522472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 36123343 - 36123417
Alignment:
Q  106 ataaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||||||  |||||||||||| ||| ||||| |||| ||||| || |||||| || |||||||||||||||||||    
T  36123343 ataaagagtagtgttatttgaacatctatttgcttgacaatcaaatagacaac-atgtttttacaaagaaaagtat 36123417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 20760299 - 20760255
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  20760299 tgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20760255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 20766690 - 20766646
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  20766690 tgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20766646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 37514159 - 37514203
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  37514159 tgtcacaaaagttgttacaaaatggatgtacaaatatcatttctc 37514203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 42815448 - 42815404
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  42815448 tgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 46665100 - 46665152
Alignment:
Q  129 atcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 181  Q
    ||||| |||||||| || || ||||||||| |||| |||||||||||||||||    
T  46665100 atcaacttgattgacaaccaaattgacaaccatatatttacaaagaaaagtat 46665152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 47015051 - 47015007
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||    
T  47015051 tgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 47015007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 35822868 - 35822928
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| ||||||||| |||| || ||| |||||||| ||||||||||||||||||    
T  35822868 tgttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaa 35822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 41430034 - 41430105
Alignment:
Q  106 ataaagagctgtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||||  ||||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  41430034 ataaagagcaatgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 41430105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 47012496 - 47012537
Alignment:
Q  150 attgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  47012496 attgacaaccatatttttacaaagaaaagtatatgttggtac 47012537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 42584980 - 42584920
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  42584980 tgttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 42584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 23845008 - 23844956
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttataaa 304  Q
    |||||||||| |||||| |||||   ||||||||||||||||||||||||||||    
T  23845008 tgtcacaaaa-ttattacaaaattgttgtacaaatatcatttctcatttataaa 23844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 40854582 - 40854619
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttgg 188  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  40854582 ttgacaaccatatttttacaaagaaaagtatgtgttgg 40854619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 40854682 - 40854727
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 296  Q
    ||||||||||||| |||||||||  ||||||| |||||||||||||    
T  40854682 tgtcacaaaagttgttagaaaatggatgtacagatatcatttctca 40854727  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 44496699 - 44496756
Alignment:
Q  120 tatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||| ||||||||| |||| ||| | || |||||| ||||||||||||||||||    
T  44496699 tatttgaacatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaa 44496756  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 22638911 - 22638959
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 299  Q
    ||||||||||||| | | |||||| |||| |||||||||||||||||||    
T  22638911 tgtcacaaaagttgtcataaaatagatgttcaaatatcatttctcattt 22638959  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 34507099 - 34507159
Alignment:
Q  117 tgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    ||||||||||| |||||| ||||||| || ||||| ||||||||| |||||| ||| ||||    
T  34507099 tgttatttgaacatcaatgtgattgacaaccacatggacaactatctttttataaaaaaaa 34507159  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 47012597 - 47012641
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    |||||||||| ||||||||||||   |||||||||||||||||||    
T  47012597 tgtcacaaaaattattagaaaatgattgtacaaatatcatttctc 47012641  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 47954029 - 47954069
Alignment:
Q  151 ttgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    |||||||| ||||||||| |||||||||||| |||||||||    
T  47954029 ttgacaaccatatttttataaagaaaagtatgtgttggtac 47954069  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 33651199 - 33651124
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttggtac 191  Q
    |||||||||||| ||| ||||| |||| ||||| || |||||| |||||||||||||||||| ||| | |||||||    
T  33651199 gtgttatttgaacatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtattggtac 33651124  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 27613053 - 27612992
Alignment:
Q  116 gtgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 177  Q
    |||||||||||| ||| ||||| |||| ||||| || |||||| |||| |||||||||||||    
T  27613053 gtgttatttgaacatctatttgtttgacaatcaaatggacaaccatatgtttacaaagaaaa 27612992  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 33651064 - 33651015
Alignment:
Q  251 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattta 300  Q
    |||||||||| |||||| |||||| |||| ||||||||||||||| ||||    
T  33651064 tgtcacaaaaattattacaaaatagatgttcaaatatcatttctctttta 33651015  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 204476 - 204516
Alignment:
Q  255 acaaaagttattagaaaatatatgtacaaatatcatttctc 295  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  204476 acaaaagttgtcagaaaatagatgtacaaatatcatttctc 204516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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