View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0175-Insertion-15 (Length: 490)
Name: NF0175-Insertion-15
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-15 |
 | |
|
| [»] chr4 (14 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 35969958 - 35970439
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcaagcctttctt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
35969958 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttatttgcgggcctttctt |
35970057 |
T |
|
| Q |
107 |
ttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgacctcttcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970058 |
ttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgacctcttcattt |
35970157 |
T |
|
| Q |
207 |
gaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatactata |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35970158 |
gaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatttagcgaccatctcagagtatgtctcggatactata |
35970257 |
T |
|
| Q |
307 |
ttgttgtgatatagtagtacttatttagtgaccatctctcagagtatgtctcggatactatattgttgtgatatacttatttagcgaccatctcagagta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970258 |
ttgttgtgatatagtagtacttatttagcaacca--tctcagagtatgtctgggatactatattgttgtgatatacttatttagcgaccatctcagagta |
35970355 |
T |
|
| Q |
407 |
tggctcggatatatattgttgtgatatactcttagcgaccatcttagagtatgtctcagatactatattgtgatgtccaaatca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970356 |
tggctcggatatatattgttgtgatatactcttagcgaccatcttagagtatgtctcagatactatattgtgatgtccaaatca |
35970439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 35974356 - 35974651
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcaagcctttctt |
106 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35974356 |
aagcaccaacctatcaccgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcgagcctttctt |
35974455 |
T |
|
| Q |
107 |
ttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgacctcttcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||||| || || |||||||||| |
|
|
| T |
35974456 |
ttaagatattagataagtgactgaaaaa-aatcaattttcatgactttactacatgtttgatttgccaagcatttggtctatcgcatgatctcttcattt |
35974554 |
T |
|
| Q |
207 |
gaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatact |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
35974555 |
gaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatataattaattagcgaccatctcagagtatgtcttggatact |
35974651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 36634374 - 36634109
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcaagcctttctt |
106 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| || | |||||||| |
|
|
| T |
36634374 |
aagcaccaacctaacaacaactctccacttctagataatgagcagtgaagagttctcatatttcatacaaattacgatgccttctctgtgaacctttctt |
36634275 |
T |
|
| Q |
107 |
ttaagatattagataagtgactgaaaaagaatcaaattttctgactttact---acatgtttgatttgccaagcacttggtctatcacacgacctcttca |
203 |
Q |
| |
|
|||||| || |||||||| ||||||||| | ||| || ||||||||||| |||||||||||||| ||||| ||||| |||||| || ||||||| |
|
|
| T |
36634274 |
ttaagacatcagataagtaactgaaaaata-tcagtttggctgactttactgaaacatgtttgatttgagaagcatttggttgatcacatgaactcttca |
36634176 |
T |
|
| Q |
204 |
tttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatt |
271 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
36634175 |
tttgaggtccatgag-ttcatctaactggtagtctccaattttaaagccaaattgtaatatacttatt |
36634109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 36641664 - 36641580
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttct |
91 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||| |
|
|
| T |
36641664 |
aagcaccaatctaacaccgactctccacttctagataatgggcagtgaagagttctcatatttcatacaaattacgatgccttct |
36641580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 36641542 - 36641430
Alignment:
| Q |
158 |
acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatatt |
257 |
Q |
| |
|
|||||||||| ||| |||||| |||||| |||||| || ||||||||||||||||||||| || ||||| ||| |||||||||||||| |||||| ||| |
|
|
| T |
36641542 |
acatgtttgacttgacaagcatttggtcgatcacatgaactcttcatttgaggtccatga-ctttatctaactggtagtctccaattttaaagccaaatt |
36641444 |
T |
|
| Q |
258 |
gtgatatacttatt |
271 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
36641443 |
gtaatatacttatt |
36641430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 36911673 - 36911761
Alignment:
| Q |
220 |
ttcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgt |
310 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| ||||| |||||||||| ||| ||||||||||||||||| | |||||||| ||||| |
|
|
| T |
36911673 |
ttcatctagctgatggtctccaattttaaagccaaattgt--tatacttatttagctaccatctcagagtatgtatgggatactaaattgt |
36911761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 36663873 - 36663768
Alignment:
| Q |
161 |
tgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtg |
260 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||||||||||||||||| ||||||||| || |||||||||||||| |||| | ||||| |
|
|
| T |
36663873 |
tgtttgatttgacaagtgtttggtctatcacatgagttcttcatttgaggtccatgag-ttcatctagttggtagtctccaattttaaagcgaaattgta |
36663775 |
T |
|
| Q |
261 |
atatact |
267 |
Q |
| |
|
||||||| |
|
|
| T |
36663774 |
atatact |
36663768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 36664026 - 36663912
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcc-tacaagttacaatgtcttctttgcaagcctttct |
105 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||| || | | ||||||||| || ||||| | ||||||| |
|
|
| T |
36664026 |
aagcgccaacctaacaccgactcaccacttctagataatggccagtgaagagttctcatattgcctttcttgttacaatgcctcctttgtgaacctttct |
36663927 |
T |
|
| Q |
106 |
tttaagatattagat |
120 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
36663926 |
tttaagatatcagat |
36663912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 36661432 - 36661371
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatt |
68 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36661432 |
aagcgccaacctaacacctactctccacttctagataatggccagtgaagagttctcatatt |
36661371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 36632078 - 36632135
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctca |
64 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
36632078 |
aagcaccaacctaacatcaactcttcacttctagataatgtgcattgaagagttctca |
36632135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18361894 - 18361935
Alignment:
| Q |
26 |
actctccacttctagataatgggcagtgaagagttctcatat |
67 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
18361894 |
actctccacttcttgataatgggcagtgaaaagttatcatat |
18361935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 29678715 - 29678768
Alignment:
| Q |
7 |
aagcaccaacataacagcgactctccacttctagataatgggcagtgaagagtt |
60 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
29678715 |
aagcaccaacctaacacaaactctcaacttctagataaagggcagtgaagagtt |
29678768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 35974604 - 35974649
Alignment:
| Q |
372 |
ttgtgatatacttatttagcgaccatctcagagtatggctcggata |
417 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| || ||||| |
|
|
| T |
35974604 |
ttgtgatataattaattagcgaccatctcagagtatgtcttggata |
35974649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 36601033 - 36600992
Alignment:
| Q |
26 |
actctccacttctagataatgggcagtgaagagttctcatat |
67 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
36601033 |
actctccacttcttgataatgggcagtgaaaagttatcatat |
36600992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 43429103 - 43429071
Alignment:
| Q |
204 |
tttgaggtccatgagattcatctagctgatagt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
43429103 |
tttgaggtccatgagattcatctagctggtagt |
43429071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 593 times since January 2019
Visitors: 2233