View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0175-Insertion-16 (Length: 904)
Name: NF0175-Insertion-16
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-16 |
 | |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 777; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 7 - 904
Target Start/End: Original strand, 38628579 - 38629476
Alignment:
| Q |
7 |
acatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38628579 |
acatctttgaagtatggtttctacaagacaacatgttcatccgtagaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcg |
38628678 |
T |
|
| Q |
107 |
ctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatctgagagaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
38628679 |
ctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcaatctgagagaga |
38628778 |
T |
|
| Q |
207 |
ccatcctgcaaacaatccaagtttacgtggctttgaagcaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38628779 |
ccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagac |
38628878 |
T |
|
| Q |
307 |
attcttgctttcgcagctcgagacagtactcgcaaagttagtggtggcaggatagactactcagtcccatcaggacgcagagatggtcgagtatctatct |
406 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38628879 |
attcttgcttttgcagctcgagacagtgctcgcaaagttagtggcggcagaatagactactcagtaccatcaggacgcagagatggtcgagtgtctatct |
38628978 |
T |
|
| Q |
407 |
tcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagagcaacttatcgataattttgacagaaaaggtttgtcagctgatgaaatggttac |
506 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38628979 |
tcgacgaagtcacacaaaatttaccaccaccaactttcagtgcggagcaacttatcgataattttgatagaaaaggtttgtcagtagatgaaatggttac |
38629078 |
T |
|
| Q |
507 |
actttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgttctatggac |
606 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38629079 |
actttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatttaacttttcctcaagatccttctatggac |
38629178 |
T |
|
| Q |
607 |
cctaactttgctaggttgttaaaaatctaagtgtccaccaccacagtcacagagcataaacccaactgtggtgcttgatggtagcacgcctaatgatttg |
706 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38629179 |
cctaactttgctaggttgtt-aaaatctaagtgtccaccaccacagtcacagagcataaacccaactgtggtgcttgatggtagcacgcctaatgatttg |
38629277 |
T |
|
| Q |
707 |
gacaacatgtactataagaggttgaagaataatcgtggtttattaacttcggatc-aacattgcttaatagtggcttaactaggagaatggtgttaaaaa |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38629278 |
gacaacatgtactataagaggttgaagaataatcgtggtttattaacttcggatcaaacattgcttaatagtggcttaactaggagaatggtgttaaaaa |
38629377 |
T |
|
| Q |
806 |
atgccagacatgctgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtsctgacaggttctgaaggtgagattaggg |
904 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38629378 |
atgctagacatgctgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggttctgaaggtgagattaggg |
38629476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 7 - 904
Target Start/End: Complemental strand, 38697702 - 38696784
Alignment:
| Q |
7 |
acatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697702 |
acatctttgaagtatggtttctacaagacaacatgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatca |
38697603 |
T |
|
| Q |
107 |
ctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatctgagagaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697602 |
ctgctggtttgattagaatgcattttcatgattgctttgtcagaggatgtgatggttctgttttattagattccataccaggtattcgatctgagagaga |
38697503 |
T |
|
| Q |
207 |
ccatcctgcaaacaatccaagtttacgtggctttgaagcaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697502 |
ccatcctgcaaacaatccaagtttacgtggctttgaagtaatcaacgaagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagac |
38697403 |
T |
|
| Q |
307 |
attcttgctttcgcagctcgagacagtactcgcaaagttagtggtggcaggatagactactcagtcccatcaggacgcagagatggtcgagtatctatct |
406 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38697402 |
attcttgcttttgcagctcgagacagtgctcgcaaagttagtggcggcagaatagactactcagtaccatcaggacgcagagatggtcgagtgtctatct |
38697303 |
T |
|
| Q |
407 |
tcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagagcaacttatcgataattttgacagaaaaggtttgtcagctgatgaaatggttac |
506 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38697302 |
tcgacgaagtcacacaaaatttaccaccaccaactttcagtgcggagcaacttatcgataattttgatagaaaaggtttgtcagtagatgaaatggttac |
38697203 |
T |
|
| Q |
507 |
actttctggagctcattctattggtgtctcacgttgtccttctttctcaaaccgattatactctttcaattcaacttttcctcaagatcgttctatggac |
606 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
38697202 |
actttctggtgctcattctattggtgtctcacattgttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatccttctatggac |
38697103 |
T |
|
| Q |
607 |
cctaactttgctaggttgttaaaaatctaagtgtccaccaccacagtca---------------------cagagcataaacccaactgtggtgcttgat |
685 |
Q |
| |
|
||| |||||||||||||||| | | || |||||||| |||||||||||| |||| | || || |||| |||| | ||||| |
|
|
| T |
38697102 |
cctgactttgctaggttgttgaga-tccaagtgtccgccaccacagtcacaacaatcacagtcacagatacagaacctagactcaacagtggcgtttgat |
38697004 |
T |
|
| Q |
686 |
ggtagcacgcctaatgatttggacaacatgtactataagaggttgaagaataatcgtggtttattaacttcggatcaac-attgcttaatagtggcttaa |
784 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38697003 |
ggttccacgcctaatgatttggacaacatgtactataagaggttgaagaataaccgtggtttattaacttcggatcaaatattggttaatagtggcttaa |
38696904 |
T |
|
| Q |
785 |
ctaggagaatggtgttaaaaaatgccagacatgctgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtsctgacagg |
884 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||| ||||| ||||||| |
|
|
| T |
38696903 |
ctaagagaatggtgttaaaaaatgccagacatgctgcaatctggaatgtgaagtttgccaaggcaatggtacatatgggtaacttggatgtgttgacagg |
38696804 |
T |
|
| Q |
885 |
ttctgaaggtgagattaggg |
904 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
38696803 |
ttctcaaggtgagattaggg |
38696784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 14256293 - 14256401
Alignment:
| Q |
38 |
catgtccatccgcggaggcaattgttagaagagctgtaaacaaagctgtttcactcaaccccggcatcgctgctggtttgattagaatgcattttcatga |
137 |
Q |
| |
|
|||||||||| || |||||||| || ||||| || | ||||||||||||||||||| || || || | |||||| ||||||||||||||||||||||| |
|
|
| T |
14256293 |
catgtccatctgctgaggcaatagtgagaagtgcaattgacaaagctgtttcactcaatcctggtataggtgctggattgattagaatgcattttcatga |
14256392 |
T |
|
| Q |
138 |
ttgctttgt |
146 |
Q |
| |
|
||||||||| |
|
|
| T |
14256393 |
ttgctttgt |
14256401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 14257539 - 14257616
Alignment:
| Q |
477 |
aaaaggtttgtcagctgatgaaatggttacactttctggagctcattctattggtgtctcacgttgtccttctttctc |
554 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||| ||||| |||||||| |||| |||| |||||||||| |
|
|
| T |
14257539 |
aaaaggtttgtcaattgatgaaatggttacactctcaggagcacattcaattggtgtatcacattgttcttctttctc |
14257616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 254 - 595
Target Start/End: Complemental strand, 30652335 - 30651991
Alignment:
| Q |
254 |
aagctaaggcacaaatagaggctgcatgtcctaaaacggtgtcctgtgcagacattcttgctttcgcagctcgagacagtactcgcaaagttagtggtgg |
353 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
30652335 |
aagctaagacacaaatagaggccgcatgtcctaaaactgtcttgtgtgcagacattctttttttca-agctcgagacagtactcgcaaagttagtggtag |
30652237 |
T |
|
| Q |
354 |
caggatagactactcagtcccatcaggacgcagagatggtcgagtatctatcttcgacgaagtcacacaaaatctaccaccaccaaatttcaatgcagag |
453 |
Q |
| |
|
| |||||||||||||| |||||| || |||||||||||| |||||||| ||||||| ||||||||||||||| | | ||| ||| | || |
|
|
| T |
30652236 |
cgacatagactactcagtagcatcagtacatagagatggtcgaacctctatctttgacgaagcaacacaaaatctaccatcgtgatattccaacgtgtag |
30652137 |
T |
|
| Q |
454 |
caacttatcgataattttgacagaaaaggtttgtcagctga-------tgaaatggttacactttctggagctcattctattggtgtctcacgttgtcct |
546 |
Q |
| |
|
|||||||| || ||||| ||||||||| ||| ||| || |||||||||||||||||| ||||||| ||||||||| ||||| | ||| | |
|
|
| T |
30652136 |
gaacttatcaatcgttttgctagaaaaggtctgttagcggatgaaaattgaaatggttacactttccggagctcgttctattggagtctcgcattg---t |
30652040 |
T |
|
| Q |
547 |
tctttctcaaaccgattatactctttcaattcaacttttcctcaagatc |
595 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||| ||| ||||||||| |
|
|
| T |
30652039 |
tctttctcaaattggttatactctttcattgaaaccttttctcaagatc |
30651991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 788 - 865
Target Start/End: Original strand, 8234649 - 8234728
Alignment:
| Q |
788 |
ggagaatggtgttaaaaaatgccagacatgctgcaat--ctggaatgtgaagtttgccaaagccatggtgcatatgggtt |
865 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
8234649 |
ggagaatggtgttaaaaactttcagacatgctgcaatttctggaaagtaaagtttgccaaagctatggtgcatatgggtt |
8234728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 788 - 865
Target Start/End: Complemental strand, 36981689 - 36981610
Alignment:
| Q |
788 |
ggagaatggtgttaaaaaatgccagacatgctgcaatct--ggaatgtgaagtttgccaaagccatggtgcatatgggtt |
865 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| |||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
36981689 |
ggagaatggtgttaaaaaatttcagacacgctacaatctctggaaagtaaagtttgccaaagccaaggtgcatatgggtt |
36981610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 788 - 865
Target Start/End: Complemental strand, 13404544 - 13404465
Alignment:
| Q |
788 |
ggagaatggtgttaaaaaatgccagacatgctgcaatct--ggaatgtgaagtttgccaaagccatggtgcatatgggtt |
865 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||| |||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
13404544 |
ggagaatggtgttaaaaactttcagactagctgcaatctctggaaagtaaagtttgccaaagctatggtgcatatgggtt |
13404465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 691 - 775
Target Start/End: Original strand, 20516595 - 20516684
Alignment:
| Q |
691 |
cacgcctaatgatttggacaacatgtactataagaggttgaagaat----aatcgtggtttattaacttcggatc-aacattgcttaata |
775 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
20516595 |
cacgcctattgatttggacaacatgtactataagaggttgaagaaagaacaaccatggtttattaacttcagatcaaacgttgcttaata |
20516684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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