View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-18 (Length: 215)
Name: NF0175-Insertion-18
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-18 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 11656125 - 11655982
Alignment:
| Q |
72 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagac |
171 |
Q |
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| T |
11656125 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagac |
11656026 |
T |
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| Q |
172 |
tcaaactctccaccatcgcaatatcgttgttgaatccgttatta |
215 |
Q |
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| T |
11656025 |
tcaaattctccaccatcgcaatatcattgttgaatccgtcatta |
11655982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 11656222 - 11656169
Alignment:
| Q |
5 |
acagaatcatccaagttatttgatgatttgatacattattgtatttaaacaaat |
58 |
Q |
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| T |
11656222 |
acagaatcatccaagttatttgatgatttgatacattattgtatttaaacaaat |
11656169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 11669858 - 11669750
Alignment:
| Q |
107 |
aaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaactctccaccatcgcaatatcgttgttgaat |
206 |
Q |
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| T |
11669858 |
aaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaat |
11669759 |
T |
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| Q |
207 |
ccgttatta |
215 |
Q |
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| T |
11669758 |
ccgtcatta |
11669750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 11664548 - 11664485
Alignment:
| Q |
106 |
aaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggag |
169 |
Q |
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| T |
11664548 |
aaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggag |
11664485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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