View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0175-Insertion-2 (Length: 860)
Name: NF0175-Insertion-2
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-2 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 660; Significance: 0; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Complemental strand, 4581776 - 4581002
Alignment:
| Q |
8 |
taatgattgccattattcatcaccagatttttattcagctacagactaattaaaatgctgtcacatgacatgttttttggcattatgattagagttgtta |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581776 |
taatgattgccattattcatcaccaaatttttattcagctacagactaatttaaacgctgtcacatgacatgttttttggcattatgattagagttgtta |
4581677 |
T |
|
| Q |
108 |
ggtaggtgtattgttggcactggcttatccctttatctctaaacctcaaatcatacacataccata------gaaaactcagaaatgagtcatttttctg |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4581676 |
ggtaggtgtattgttggcactggctaatccctttatctctaaacctcaagtcatacacatactataatacaagaaaactcagaaatgagtcatttttctg |
4581577 |
T |
|
| Q |
202 |
ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581576 |
ataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacat |
4581477 |
T |
|
| Q |
302 |
aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattcca |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581476 |
aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattcca |
4581377 |
T |
|
| Q |
402 |
gatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaac |
501 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| | |||| |
|
|
| T |
4581376 |
gatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcctacaacctttttgtgaac |
4581277 |
T |
|
| Q |
502 |
ttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctga |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4581276 |
ttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgataatagcatgtattttacaatacaagctgctga |
4581177 |
T |
|
| Q |
602 |
agaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcatacca |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581176 |
agaactttcaatccctgttgttttctttagtccagccagtgcatgtatgtttttgacttgttttcacttacctacactgtttgacaaaggtgtcatacca |
4581077 |
T |
|
| Q |
702 |
ctaaaaggtaacaatcaattaatcttctttctttcttcatacctgtattgtagttaaagtattaatatgacattt |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4581076 |
ctaaaaggtaacaatcaattaatcttctttctttcttcatagatgtagtgtagttaaagtattaatatgacattt |
4581002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 210 - 860
Target Start/End: Original strand, 4612292 - 4612949
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||| | ||||||||| | ||||||||| ||||||||||||||||||||||||||||| || | |
|
|
| T |
4612292 |
ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcg |
4612391 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||| ||||||||| | |
|
|
| T |
4612392 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggtct |
4612491 |
T |
|
| Q |
410 |
aactccgatagaaggcgatg------gtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaactt |
503 |
Q |
| |
|
| || | | |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
4612492 |
accttcaaacgaaggcgatggtgatggtgatgttagtcaagacatatatgctctttgtgaatcaatcagaaagaacttcctacaaccttttcgcgaactt |
4612591 |
T |
|
| Q |
504 |
cttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaag |
603 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||| |||||||| |||||| |||||||||| ||||| |
|
|
| T |
4612592 |
atttctagacttaatgactctgccacttctggtcttgtccctccggttacgtgcataattgctgataatagcatgtcttttaccatacaagctggtgaag |
4612691 |
T |
|
| Q |
604 |
aactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcataccact |
703 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
4612692 |
aactttcaatccctgttgttttctttagtccagccaatgcatgtacattttggactggttttcacttacttacattgtttgataaaggtgtcataccact |
4612791 |
T |
|
| Q |
704 |
aaaaggtaacaatcaattaatcttctttctttcttcatacctgtattgtagttaaagtattaatatgacatttgttacaagtatggagattccatatcaa |
803 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||| || ||||||||| | ||| | | |||||||| || |||| |
|
|
| T |
4612792 |
aaaaggtaacgatcatttaatcttctttctttcttcataggtgtagtgtagttaaagtgttcatatgacatgtattaggaatctggagattttatttcaa |
4612891 |
T |
|
| Q |
804 |
gttaacagattttgt-aatttgatgtacagatgacagttatctcacaaacggatattt |
860 |
Q |
| |
|
| ||||| |||||| ||||||| | ||||||| |||||||| |||||||||||||| |
|
|
| T |
4612892 |
gctaacaacttttgtaaatttgacatgcagatgagagttatctgacaaacggatattt |
4612949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 200 - 860
Target Start/End: Complemental strand, 4572530 - 4571873
Alignment:
| Q |
200 |
tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac |
299 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||| ||||||| ||||| | |||||| | ||||||||| |||||||||||||||| |||||| |
|
|
| T |
4572530 |
tgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcac |
4572431 |
T |
|
| Q |
300 |
ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattc |
399 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
4572430 |
ataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattc |
4572331 |
T |
|
| Q |
400 |
cagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgaga |
499 |
Q |
| |
|
||||||||||| |||| | || |||||||| ||||||||||||||||| || ||||| ||| ||||| |||| || || || |||||||||||||| || |
|
|
| T |
4572330 |
cagatggtttatctccaacggatggcgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaacctttccgcga |
4572231 |
T |
|
| Q |
500 |
acttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgct |
599 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4572230 |
acttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttctgatattagcatgtcctttactatacaagctgct |
4572131 |
T |
|
| Q |
600 |
gaagaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcatac |
699 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || ||| |||||||| || |||||||| |||| |||| |||| | | || |||||| |||||| |
|
|
| T |
4572130 |
gaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttctgactggtattcatttacgtacatttctagataaaggtctcatac |
4572031 |
T |
|
| Q |
700 |
cactaaaaggtaacaatcaattaatcttctttctttcttcatacctgtattgtagttaaagtattaatatgacatttgttacaagtatggagattccata |
799 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| | || ||||||||||||| || |
|
|
| T |
4572030 |
cactaaaaggtaa----caattaatcttctttctttcttcatatgtgtagagtagttaaagtgttcatatgacatatatttggagtatggagattcaatt |
4571935 |
T |
|
| Q |
800 |
tcaagttaacagattttgt-aatttgatgtacagatgacagttatctcacaaacggatattt |
860 |
Q |
| |
|
||| ||||| |||||| |||||||| | ||||||| |||||||| |||||||||||||| |
|
|
| T |
4571934 |
tcacactaacaacttttgtaaatttgatatgcagatgagagttatctgacaaacggatattt |
4571873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 200 - 742
Target Start/End: Complemental strand, 4558689 - 4558151
Alignment:
| Q |
200 |
tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac |
299 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||| ||||||| ||||| | |||||| | | ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4558689 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcac |
4558590 |
T |
|
| Q |
300 |
ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattc |
399 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4558589 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattc |
4558490 |
T |
|
| Q |
400 |
cagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgaga |
499 |
Q |
| |
|
| |||||||||||||| | || || ||||| ||||||||||||||||| || ||||| ||| ||||| ||||||| |||||||||||||||||||| || |
|
|
| T |
4558489 |
cggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcga |
4558390 |
T |
|
| Q |
500 |
acttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgct |
599 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| || |
|
|
| T |
4558389 |
acttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgatattggcatgtcttttaccatacaagcttct |
4558290 |
T |
|
| Q |
600 |
gaagaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcatac |
699 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||| |||||||| |||||||| | |||| || |||| |||| || |||||| |||||| |
|
|
| T |
4558289 |
gaagaactttcaatcccttctgttttctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataaaggtctcatac |
4558190 |
T |
|
| Q |
700 |
cactaaaaggtaacaatcaattaatcttctttctttcttcata |
742 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4558189 |
cactaaaaggtaa----caattaatcttcttgctttcttcata |
4558151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 213 - 860
Target Start/End: Complemental strand, 4587183 - 4586537
Alignment:
| Q |
213 |
catgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtca |
312 |
Q |
| |
|
||||| ||||| || |||| |||| ||||||| ||||| | |||||| | | |||||| || |||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
4587183 |
catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa |
4587084 |
T |
|
| Q |
313 |
acaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggtttaac |
412 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||||| |||||| |||||||||| ||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4587083 |
acactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaac |
4586984 |
T |
|
| Q |
413 |
tccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttcttgctaga |
512 |
Q |
| |
|
||| | || || ||||||||||||||||||||||| || ||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4586983 |
tccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttcttgctaga |
4586884 |
T |
|
| Q |
513 |
cttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaagaactttcaa |
612 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
4586883 |
cttaatgactctgcaacatctggtcttatccctccagtcacttgtatagtttctgatattaccatgtcctttactatacaagctgctgaagaactttcac |
4586784 |
T |
|
| Q |
613 |
tccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcataccactaaaaggtaa |
712 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||| |||||||| || |||| || |||| |||| || |||||| ||||||||||||| ||||| |
|
|
| T |
4586783 |
tcccacttgttttctttaatccagccagtgcatgtatgtttttgacttgtattcattttagtacattgttggataaaggtctcataccactaaagggtaa |
4586684 |
T |
|
| Q |
713 |
caatcaattaatcttctttctttcttcatacctgtattgtagttaaagtattaatatgacatttgttacaagtatggagattccatatcaagttaacaga |
812 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| || || ||||||||| | || |||||| |||||| || ||||| ||||| |
|
|
| T |
4586683 |
----caattaatcttctttctttcttcatatatgtagaatagttagcgtgttcatatgacatatatttggagtatgaagattcaatttcaagctaacaac |
4586588 |
T |
|
| Q |
813 |
ttttgt-aatttgatgta--cagatgacagttatctcacaaacggatattt |
860 |
Q |
| |
|
|||| | |||||||| || ||||| | |||||||| |||||||||||||| |
|
|
| T |
4586587 |
ttttataaatttgatatatgcagataagagttatctgacaaacggatattt |
4586537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 207 - 714
Target Start/End: Complemental strand, 4517897 - 4517390
Alignment:
| Q |
207 |
aagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacct |
306 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||| ||||| | ||| || ||| ||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4517897 |
aagccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacct |
4517798 |
T |
|
| Q |
307 |
ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatgg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4517797 |
ttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatgg |
4517698 |
T |
|
| Q |
407 |
tttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgt--gaatcagtcagaaaaaacttcctacaacctttccgagaacttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || ||| | ||||| || ||| || || ||| | ||||||| |
|
|
| T |
4517697 |
tttaactccgatagaaggcgatggtgatgttagtcaagacat-tat-ctctctttccgattcaataagaaagaatttctatcaccccttctgtgaacttc |
4517600 |
T |
|
| Q |
505 |
ttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaaga |
604 |
Q |
| |
|
||||||||||||| || ||| ||| | ||||| | | ||||| |||| |||| |||||||||||||| | || |||||| ||||||||||||||||| |
|
|
| T |
4517599 |
ttgctagacttaaagattcttccaatgatggtcatattcctcctgttagttgcttagtttctgatattggattgacttttactatacaagctgctgaaga |
4517500 |
T |
|
| Q |
605 |
actttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcataccacta |
704 |
Q |
| |
|
|| | | ||| |||| | ||||||||||| ||||||||| ||| || | | ||| ||||| | |||| || |||| ||||||||||||||||| |
|
|
| T |
4517499 |
acatggtttacctagtgttctatttagttcagctagtgcatgttcacttctgtcggctttgcactttcgtacattgattgataaaggtgtcataccactc |
4517400 |
T |
|
| Q |
705 |
aaaggtaaca |
714 |
Q |
| |
|
|||||||||| |
|
|
| T |
4517399 |
aaaggtaaca |
4517390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 203 - 712
Target Start/End: Complemental strand, 4599724 - 4599216
Alignment:
| Q |
203 |
taaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacata |
302 |
Q |
| |
|
|||||| | ||||||||| |||||||||| ||| |||||||| |||| | || |||||| | |||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
4599724 |
taaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacata |
4599625 |
T |
|
| Q |
303 |
acctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccag |
402 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||||||||||| || | | |||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
4599624 |
accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactattccag |
4599525 |
T |
|
| Q |
403 |
atggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaact |
502 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||| || |||||| || |||||||| ||||| ||||||| |||||||| ||||| || || ||||| |
|
|
| T |
4599524 |
atggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcctccaaccatttcgcgaact |
4599425 |
T |
|
| Q |
503 |
tcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaa |
602 |
Q |
| |
|
|||||||||||| |||| ||| | ||| |||||||| ||||||||||||||||| ||| || |||| | ||||| ||||| ||||||| ||||||| |
|
|
| T |
4599424 |
tcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttag-ttatgattggaacatgtcctttactatacaagttgctgaa |
4599326 |
T |
|
| Q |
603 |
gaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcataccac |
702 |
Q |
| |
|
||||||||| | ||| ||||| |||||||| || ||| |||||||| | |||||| |||| |||||||| ||| ||||||| ||| || ||||||||| |
|
|
| T |
4599325 |
gaactttcacttcctattgttctctttagtccatccaatgcatgtacattcttgacttgtttacacttaccgacattgtttgaaaaatgtctcataccac |
4599226 |
T |
|
| Q |
703 |
taaaaggtaa |
712 |
Q |
| |
|
|||||||||| |
|
|
| T |
4599225 |
taaaaggtaa |
4599216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 202 - 716
Target Start/End: Complemental strand, 4623869 - 4623355
Alignment:
| Q |
202 |
ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat |
301 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||| ||||| | |||||| | | |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4623869 |
ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat |
4623770 |
T |
|
| Q |
302 |
aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattcca |
401 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||| |||||| |
|
|
| T |
4623769 |
aacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattcca |
4623670 |
T |
|
| Q |
402 |
gatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaac |
501 |
Q |
| |
|
||||||||||| || || ||||| |||||||||||||||||||||||| |||| | ||| ||| | || || || ||| || || || | |||| |
|
|
| T |
4623669 |
gatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaatttctatcatcccttttgtgaac |
4623570 |
T |
|
| Q |
502 |
ttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctga |
601 |
Q |
| |
|
||||||| | |||| |||||||||||||| |||||||||| || |||||||||||| ||||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
4623569 |
ttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctga |
4623470 |
T |
|
| Q |
602 |
agaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcatacca |
701 |
Q |
| |
|
||| | | || |||| |||||||||| |||| |||||| ||| | ||| ||| ||| ||||| | |||||||||||| |||||| | |||||| |
|
|
| T |
4623469 |
agagcatgcactcccaattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaatacca |
4623370 |
T |
|
| Q |
702 |
ctaaaaggtaacaat |
716 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4623369 |
ctcaaaggtaacaat |
4623355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 207 - 606
Target Start/End: Complemental strand, 4627707 - 4627308
Alignment:
| Q |
207 |
aagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacct |
306 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||||| | |||||| | | ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4627707 |
aagccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacct |
4627608 |
T |
|
| Q |
307 |
ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatgg |
406 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
4627607 |
ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatgg |
4627508 |
T |
|
| Q |
407 |
tttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttctt |
506 |
Q |
| |
|
|||||| || ||||||| ||||| ||||||| |||||||||| |||| | ||||| | ||||| |||||||| || || || | ||||||||| |
|
|
| T |
4627507 |
tttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttcagccctttggtgaacttctt |
4627408 |
T |
|
| Q |
507 |
gctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaagaac |
606 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||||||| | |||||||||||| ||||||| ||| | |||| ||||| ||||||||||||||||||| |
|
|
| T |
4627407 |
gctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccatacaagctgctgaagaac |
4627308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 227 - 445
Target Start/End: Complemental strand, 4569607 - 4569393
Alignment:
| Q |
227 |
tccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaat |
326 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccgaa----at |
4569512 |
T |
|
| Q |
327 |
cacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcg |
426 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4569511 |
cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggtt |
4569412 |
T |
|
| Q |
427 |
atggtgatgttagtcaaga |
445 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
4569411 |
atggtgatattagtcaaga |
4569393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 210 - 569
Target Start/End: Complemental strand, 4507465 - 4507106
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||| | |||||| | | |||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4507465 |
ccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttg |
4507366 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
|
|
| T |
4507365 |
ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatggttt |
4507266 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttcttgct |
509 |
Q |
| |
|
|||||| || || || ||||||||||||| || |||| | | || | ||||||| | ||||| || || | | ||||| || |||||||| ||| |
|
|
| T |
4507265 |
aactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttatttacccttttcgcgaacttctagct |
4507166 |
T |
|
| Q |
510 |
agacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
4507165 |
agacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgcttagtttctgat |
4507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 210 - 445
Target Start/End: Complemental strand, 4618855 - 4618620
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||| ||||| | |||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618855 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
4618756 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
4618755 |
ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggttt |
4618656 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaaga |
445 |
Q |
| |
|
||| || || ||||| |||||||||||||||||||| |
|
|
| T |
4618655 |
aacaccaatggaaggtgatggtgatgttagtcaaga |
4618620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 206 - 569
Target Start/End: Original strand, 4488767 - 4489130
Alignment:
| Q |
206 |
aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc |
305 |
Q |
| |
|
|||||||||||||||||| | |||| |||| ||||||| ||||| | | |||| | | ||||| ||| || |||||||||||||| |||||||||||| |
|
|
| T |
4488767 |
aaagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacc |
4488866 |
T |
|
| Q |
306 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatg |
405 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
4488867 |
tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatg |
4488966 |
T |
|
| Q |
406 |
gtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttct |
505 |
Q |
| |
|
|||||||||| | ||| || ||||| |||||||||||||| || ||||| ||| |||| ||| || || || | ||| || | | | |||| |
|
|
| T |
4488967 |
gtttaactccaacagatggtgatggcgatgttagtcaagatttacgcgctctttgtctatcaatcatgaacaattttcaccaattctttggtgtatttct |
4489066 |
T |
|
| Q |
506 |
tgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4489067 |
tgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgat |
4489130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 286 - 569
Target Start/End: Original strand, 4502943 - 4503226
Alignment:
| Q |
286 |
ttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttac |
385 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
386 |
ctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttccta |
485 |
Q |
| |
|
||||||||| || |||||||||||||||||| | ||||| ||||||||||||||||||||| || ||||||| | |||| ||| || || || | |
|
|
| T |
4503043 |
ctttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagacttacgcgctctctatctatcaatcaagaagaattttcac |
4503142 |
T |
|
| Q |
486 |
caacctttccgagaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
||| || | ||| |||||| || ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4503143 |
caattctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgat |
4503226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 202 - 716
Target Start/End: Original strand, 4258742 - 4259256
Alignment:
| Q |
202 |
ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat |
301 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| ||||| | |||||| | | |||||| |||||||||||| ||| ||| |||||||| |
|
|
| T |
4258742 |
ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat |
4258841 |
T |
|
| Q |
302 |
aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattcca |
401 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
4258842 |
aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaa |
4258941 |
T |
|
| Q |
402 |
gatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaac |
501 |
Q |
| |
|
|||||| | ||||| | ||||| ||||| ||||||| ||||||| || | || | | |||| | ||||| |||||||| || || || | |||| |
|
|
| T |
4258942 |
gatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttcagccctttggtgaac |
4259041 |
T |
|
| Q |
502 |
ttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctga |
601 |
Q |
| |
|
||||||||| |||| | ||||| |||||| ||||| |||| || || ||||||||| ||||||||||| | ||||| |||| |||||||||||||| |
|
|
| T |
4259042 |
ttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtatacaagctgctga |
4259141 |
T |
|
| Q |
602 |
agaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactgtttgacaaaggtgtcatacca |
701 |
Q |
| |
|
||| | | || |||| |||||||||| | |||| |||||| ||| | ||| ||| ||| ||||| | |||||||||||| |||||| | |||||| |
|
|
| T |
4259142 |
agagcatgcactcccaattgttttcttctctccagctagtgcaagtaccttcttgtctgttttacactttcgtacactgtttgaaaaaggtctaatacca |
4259241 |
T |
|
| Q |
702 |
ctaaaaggtaacaat |
716 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4259242 |
ctcaaaggtaacaat |
4259256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 210 - 432
Target Start/End: Original strand, 4513553 - 4513775
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| | |||| | | | | ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
4513553 |
ccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttg |
4513652 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4513653 |
ttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggttt |
4513752 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtg |
432 |
Q |
| |
|
|||||| || || |||||||||| |
|
|
| T |
4513753 |
aactccaatggatggcgatggtg |
4513775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 210 - 449
Target Start/End: Complemental strand, 4594564 - 4594325
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| |||||| | | ||| ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4594564 |
ccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttg |
4594465 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||| | | ||||| |||||| || || ||||||||| | |
|
|
| T |
4594464 |
tcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtct |
4594365 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaagacata |
449 |
Q |
| |
|
||| || || ||||| |||||||||||||||||||||||| |
|
|
| T |
4594364 |
aacaccaatggaaggtgatggtgatgttagtcaagacata |
4594325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 210 - 446
Target Start/End: Complemental strand, 3173557 - 3173321
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||| ||||| | | |||| | | ||||||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
3173557 |
ccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttg |
3173458 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
3173457 |
taaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggttt |
3173358 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaagac |
446 |
Q |
| |
|
|||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
3173357 |
aacttcaatggaaggtgatggtgatgttagtcaagac |
3173321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 204 - 446
Target Start/End: Complemental strand, 4482425 - 4482183
Alignment:
| Q |
204 |
aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa |
303 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||| |||||| ||||| | | |||| | | | ||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
4482425 |
aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa |
4482326 |
T |
|
| Q |
304 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccaga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| || || ||||| |
|
|
| T |
4482325 |
cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccaga |
4482226 |
T |
|
| Q |
404 |
tggtttaactccgatagaaggcgatggtgatgttagtcaagac |
446 |
Q |
| |
|
|||||||||||| || ||||| |||| ||| || ||||||||| |
|
|
| T |
4482225 |
tggtttaactccaattgaaggtgatgatgaagtaagtcaagac |
4482183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 204 - 569
Target Start/End: Complemental strand, 4576015 - 4575650
Alignment:
| Q |
204 |
aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa |
303 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| ||||||| ||||| | | |||| | | | ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4576015 |
aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa |
4575916 |
T |
|
| Q |
304 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccaga |
403 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| || |||| |||||||||||| ||||| |
|
|
| T |
4575915 |
cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccaga |
4575816 |
T |
|
| Q |
404 |
tggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccga-gaact |
502 |
Q |
| |
|
|||||||||||| | || || |||||||||| ||||||||| || | |||| |||||||| ||| || ||||| | | || | | || ||||| |
|
|
| T |
4575815 |
tggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatcataacgaactttc-gccacttctttgatgaact |
4575717 |
T |
|
| Q |
503 |
tcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
|||||||| |||| | |||||||||||| |||||||| |||| ||||| |||||| ||||||||||| |
|
|
| T |
4575716 |
tcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgat |
4575650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 206 - 451
Target Start/End: Original strand, 4265627 - 4265872
Alignment:
| Q |
206 |
aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc |
305 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||| ||||| | | |||| | | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4265627 |
aaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacc |
4265726 |
T |
|
| Q |
306 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatg |
405 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||| |||||||| || ||||||| |
|
|
| T |
4265727 |
tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatg |
4265826 |
T |
|
| Q |
406 |
gtttaactccgatagaaggcgatggtgatgttagtcaagacatata |
451 |
Q |
| |
|
|| ||||||| || |||||| ||||||||| || |||||||||||| |
|
|
| T |
4265827 |
gtctaactccaatggaaggcaatggtgatgctactcaagacatata |
4265872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 210 - 528
Target Start/End: Complemental strand, 4565583 - 4565265
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||||||||| |||||| | | ||| ||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4565583 |
ccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttg |
4565484 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||| | | |||| |||||| || || ||||||||| | |
|
|
| T |
4565483 |
tcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccataccagatggtct |
4565384 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttcttgct |
509 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| || | |||| | |||| | |||||||| ||||| ||||||| | ||||||||| | |
|
|
| T |
4565383 |
aacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctcttgctcaatctataagaaaaaatttccttaaacctttttgtgaacttcttaca |
4565284 |
T |
|
| Q |
510 |
agacttaatgactctgcca |
528 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4565283 |
agacttaatgactctgcca |
4565265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 212 - 445
Target Start/End: Complemental strand, 4603662 - 4603429
Alignment:
| Q |
212 |
acatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtc |
311 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| | |||| | | | ||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
4603662 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
4603563 |
T |
|
| Q |
312 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggtttaa |
411 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||| ||||||| |||||| || || |||||||| ||| |
|
|
| T |
4603562 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatggactaa |
4603463 |
T |
|
| Q |
412 |
ctccgatagaaggcgatggtgatgttagtcaaga |
445 |
Q |
| |
|
| ||||| ||||| |||| | ||||||||||||| |
|
|
| T |
4603462 |
caccgatggaaggtgatgataatgttagtcaaga |
4603429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 310 - 647
Target Start/End: Original strand, 4298172 - 4298509
Alignment:
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||| | |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttcttgct |
509 |
Q |
| |
|
||||| | ||||| ||||| ||||||| |||||||||| |||| | ||||| ||||||| |||||||| || || || | |||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttggtgaacttcttgct |
4298371 |
T |
|
| Q |
510 |
agacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaagaacttt |
609 |
Q |
| |
|
| |||| ||| ||||||||| |||||||||| || |||||||||||| ||||| ||||| || |||| ||||| ||||||||||| ||||||| | |
|
|
| T |
4298372 |
aaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccatacaagctgcggaagaacatg |
4298471 |
T |
|
| Q |
610 |
caatccctgttgttttctttagttcagccagtgcatgt |
647 |
Q |
| |
|
|| |||| || || ||||| || |||| ||||||||| |
|
|
| T |
4298472 |
cactcccaattattctcttttgtccagctagtgcatgt |
4298509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 206 - 569
Target Start/End: Complemental strand, 4471472 - 4471112
Alignment:
| Q |
206 |
aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc |
305 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |||||| ||||| | | |||| | | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4471472 |
aaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacg |
4471373 |
T |
|
| Q |
306 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatg |
405 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | | ||||||||||||| || |||| ||||||||| |||||| ||| |
|
|
| T |
4471372 |
tttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatg |
4471273 |
T |
|
| Q |
406 |
gtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttct |
505 |
Q |
| |
|
|||| ||| | || ||| | ||||||| ||| |||||||||| | | | | | |||| ||| | ||||||| ||||| || | |||||||| |
|
|
| T |
4471272 |
gttttactgcaatggaaag---tggtgatcttattcaagacatacactccttttttcgatcaatcatgacggacttccttcaaccctttggtgaacttct |
4471176 |
T |
|
| Q |
506 |
tgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
| |||||||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4471175 |
tactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgat |
4471112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 268 - 569
Target Start/End: Complemental strand, 4562158 - 4561857
Alignment:
| Q |
268 |
tagcaaagcttcttcaccttagaggctttcacataa-cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttg |
366 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||| ||||||| |
|
|
| T |
4562158 |
tagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttg |
4562060 |
T |
|
| Q |
367 |
atggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatc |
466 |
Q |
| |
|
|||||||||| || |||| |||||||||||| ||||||||||||||||| | || || ||||||||| ||||||||||| || | |||| ||||||| |
|
|
| T |
4562059 |
atggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatc |
4561960 |
T |
|
| Q |
467 |
agtcagaaaaaacttcctacaacctttccga-gaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttc |
565 |
Q |
| |
|
| ||| || ||||| | || || | | || ||||||||||||| |||| | |||||||||||| |||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
4561959 |
aatcataacgaactttc-accacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttc |
4561861 |
T |
|
| Q |
566 |
tgat |
569 |
Q |
| |
|
|||| |
|
|
| T |
4561860 |
tgat |
4561857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 206 - 409
Target Start/End: Complemental strand, 4462765 - 4462562
Alignment:
| Q |
206 |
aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc |
305 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||| ||||| | | |||| | | ||||| ||| || |||||||||||||| |||||||||||| |
|
|
| T |
4462765 |
aaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacc |
4462666 |
T |
|
| Q |
306 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatg |
405 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| ||||||||||| || | | ||||||||||| || |||| ||||||||| |||||| ||| |
|
|
| T |
4462665 |
tttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatg |
4462566 |
T |
|
| Q |
406 |
gttt |
409 |
Q |
| |
|
|||| |
|
|
| T |
4462565 |
gttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 4255387 - 4255545
Alignment:
| Q |
202 |
ataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacat |
301 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||||| ||||| | || |||| | | ||||||||| | ||||| |||| ||||||| |
|
|
| T |
4255387 |
ataaaatgccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt----- |
4255481 |
T |
|
| Q |
302 |
aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4255482 |
-------gtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 800 - 860
Target Start/End: Complemental strand, 4581002 - 4580942
Alignment:
| Q |
800 |
tcaagttaacagattttgtaatttgatgtacagatgacagttatctcacaaacggatattt |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581002 |
tcaagttaacagattttgtaatttgatgtacagatgacagttatctcacaaacggatattt |
4580942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 4590188 - 4590091
Alignment:
| Q |
8 |
taatgattgccattattcatcaccagatttttattcagctacagactaattaaaatgctgtcacatgacatgtttt-ttggcattatgattagagttg |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||| |||||||||| ||||||||| | |||||||||||| |||||||||||| |||||||| |
|
|
| T |
4590188 |
taatgattgccattattcatcaccaaatttttcatctgcttcagactaatttaaatgctgtgatatgacatgttttgttggcattatgactagagttg |
4590091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 498 - 569
Target Start/End: Complemental strand, 4462476 - 4462405
Alignment:
| Q |
498 |
gaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
||||||||| | |||||| ||| |||||||||| | | |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4462476 |
gaacttcttacaagacttgatgcctctgccactgccgatcttatccctccggttacttgcatagtttctgat |
4462405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
| Q |
319 |
aatacaatcacaaacgcttgctcaaatcaagaggtc |
354 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 204 - 569
Target Start/End: Complemental strand, 2384 - 2016
Alignment:
| Q |
204 |
aaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataa |
303 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| ||||||| ||||| | ||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
304 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccaga |
403 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || ||||||||||| | |||||| ||| ||||||||||| || |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccga |
2185 |
T |
|
| Q |
404 |
tggtttaactcc---gatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaa |
500 |
Q |
| |
|
|||||||||||| | ||| | |||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||| || || || ||| |
|
|
| T |
2184 |
tggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttcacttctttcgcgaa |
2085 |
T |
|
| Q |
501 |
cttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat |
569 |
Q |
| |
|
||||||||||||||| | || ||||||| |||||||||| |||||||||| ||| || ||||||||||| |
|
|
| T |
2084 |
cttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgat |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 210 - 605
Target Start/End: Original strand, 2025 - 2423
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||| ||||| | |||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2025 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
2124 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| || || ||||||||||| | |||||| ||| ||||||||||| |||||||| |
|
|
| T |
2125 |
tcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggttt |
2224 |
T |
|
| Q |
410 |
aactcc---gatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgagaacttctt |
506 |
Q |
| |
|
|||||| | ||| | |||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||| || || || ||||||||| |
|
|
| T |
2225 |
aactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttcacttctttcgcgaacttctt |
2324 |
T |
|
| Q |
507 |
gctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgctgaagaa |
605 |
Q |
| |
|
||||||||| | || ||||||| |||||||||| |||||||||| ||| || ||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
2325 |
gctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctgctgaagaa |
2423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 378 - 860
Target Start/End: Original strand, 16685029 - 16685517
Alignment:
| Q |
378 |
gattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaa |
477 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||| | || || ||||| |||||||||||||||||| | ||||| ||| ||||| ||||||| | |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaaga |
16685128 |
T |
|
| Q |
478 |
acttcctacaacctttccgagaacttcttgctagacttaatgactctgc------ca-cttctggtcttgtccctccagttacttgcatagtttctgata |
570 |
Q |
| |
|
||||||| ||||| || || |||| ||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685129 |
acttcctccaaccctttcgcgaacatcttgctagacttcatgaccgtgcacggtgcatcatctggtcttgtccctccagttacttgcatagtttctgata |
16685228 |
T |
|
| Q |
571 |
ttagcatgtattttacaatacaagctgctgaagaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcactt |
670 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||| | || | | |||||||| |||| ||| | |||| || |
|
|
| T |
16685229 |
ttagcatgtcttttactatacaagctgctgaagaactttcactccctgttgttctctttaatccatcgaatgcatgtacatttttaacttttattcattt |
16685328 |
T |
|
| Q |
671 |
acctacactgtttgacaaaggtgtcataccactaaaaggtaacaatcaattaatcttctttctttcttcatacctgtattgtagttaaagtattaatatg |
770 |
Q |
| |
|
|||| |||| || |||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| |||| |||||| ||| || ||||| |
|
|
| T |
16685329 |
tagtacattgttggataaaggtctcataccactaaatggtaa----caatgaatcttctttctttcttcatatatgtagaatagttagagtgttcatatg |
16685424 |
T |
|
| Q |
771 |
acatttgttacaagtatggagattccatatcaagttaacagattttgt-aatttgatgta--cagatgacagttatctcacaaacggatattt |
860 |
Q |
| |
|
|||| |||| |||||||||||||| || | ||| ||||| |||||| |||||||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
16685425 |
acatatgtttgaagtatggagattcaattttaagctaacaacttttgtaaatttgatatatgcagatgagagttatctgacaaacggatattt |
16685517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 211 - 443
Target Start/End: Complemental strand, 1676074 - 1675842
Alignment:
| Q |
211 |
cacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgt |
310 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||||| | |||||| | | ||||||||| ||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
1676074 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1675975 |
T |
|
| Q |
311 |
caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttta |
410 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| || || ||||||||| || |
|
|
| T |
1675974 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1675875 |
T |
|
| Q |
411 |
actccgatagaaggcgatggtgatgttagtcaa |
443 |
Q |
| |
|
|| || ||||||| |||||||||||||||||| |
|
|
| T |
1675874 |
acaccactagaaggtgatggtgatgttagtcaa |
1675842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 181 - 717
Target Start/End: Original strand, 20862355 - 20862885
Alignment:
| Q |
181 |
cagaaatgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttct |
280 |
Q |
| |
|
|||| |||||| ||||| |||| ||||| |||||||||||||| | |||||||||||||||||| ||||| | |||| | ||| ||||||||| || || |
|
|
| T |
20862355 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
20862454 |
T |
|
| Q |
281 |
tcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgat |
380 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||| || |||| ||||||| | |||||||||||||||| || |
|
|
| T |
20862455 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgac |
20862554 |
T |
|
| Q |
381 |
tttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaact |
480 |
Q |
| |
|
||| ||||||||| |||||||||||| |||| | | | || || |||||||||||||||| | | |||| |||||| | |||||| |||| |
|
|
| T |
20862555 |
tttcgctttgagaccgttccagatggttcaacttc---acatgg---tgatgatgttagtcaagacttccaatctcttcgtgaattaatcagaacgaact |
20862648 |
T |
|
| Q |
481 |
tcctacaacctttccgagaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgta |
580 |
Q |
| |
|
|| | | ||| || ||||||||||| | |||| |||||||| ||| ||||||||| | ||||| ||||||||| |||||||||||| | ||||| |
|
|
| T |
20862649 |
tcatcgacagttttcgtgaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtc |
20862748 |
T |
|
| Q |
581 |
ttttacaatacaagctgctgaagaactttcaatccctgttgttttctttagttcagccagtgcatgtatgcttttgactggttttcacttacctacactg |
680 |
Q |
| |
|
|||| ||||||| ||||||||||||| || |||| ||||| || ||| || | ||||| ||| | ||| ||| ||| || |||| |||| || |
|
|
| T |
20862749 |
agttaccatacaagttgctgaagaacttgcactcccaattgttctccttatcccatctagtgcttgttctttcttgtctgctttacatttacgtacattg |
20862848 |
T |
|
| Q |
681 |
tttgacaaaggtgtcataccactaaaaggtaacaatc |
717 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||| |
|
|
| T |
20862849 |
attgagaaaggtgtcatacccctcaaaggtaacaatc |
20862885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 200 - 604
Target Start/End: Complemental strand, 3088309 - 3087905
Alignment:
| Q |
200 |
tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcac |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3088309 |
tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac |
3088210 |
T |
|
| Q |
300 |
ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattc |
399 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||| |||||||||||| | || | ||||||||||||| |||||| |||||||||||| | |
|
|
| T |
3088209 |
ataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatcc |
3088110 |
T |
|
| Q |
400 |
cagatggtttaactccgatagaaggcgatggtgatgttagtcaagacatatatgctctctgtgaatcagtcagaaaaaacttcctacaacctttccgaga |
499 |
Q |
| |
|
||||||| ||||||| || ||||| |||||||||||||||||||| | |||| ||| ||||||| |||| |||||| | ||||| || | || |
|
|
| T |
3088109 |
aagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattcaaccctttggtga |
3088010 |
T |
|
| Q |
500 |
acttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctgct |
599 |
Q |
| |
|
||||||| | || || ||||||||||| | |||||||| | || |||||||||||| |||| ||||| || |||| ||||| ||||||| |||| |
|
|
| T |
3088009 |
acttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgct |
3087910 |
T |
|
| Q |
600 |
gaaga |
604 |
Q |
| |
|
||||| |
|
|
| T |
3087909 |
gaaga |
3087905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 210 - 443
Target Start/End: Complemental strand, 1282987 - 1282754
Alignment:
| Q |
210 |
ccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg |
309 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||| | |||||| | | ||||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
1282987 |
ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg |
1282888 |
T |
|
| Q |
310 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttt |
409 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||| |||||| || || ||||||||| | |
|
|
| T |
1282887 |
ttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtct |
1282788 |
T |
|
| Q |
410 |
aactccgatagaaggcgatggtgatgttagtcaa |
443 |
Q |
| |
|
||| | ||||||| |||||||||||||||||| |
|
|
| T |
1282787 |
aacatcactagaaggtgatggtgatgttagtcaa |
1282754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 206 - 451
Target Start/End: Complemental strand, 24104653 - 24104408
Alignment:
| Q |
206 |
aaagccacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacc |
305 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||||| ||||| | | |||| | | ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24104653 |
aaagccgcatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacc |
24104554 |
T |
|
| Q |
306 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatg |
405 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| ||||||||| ||| || | |||||||||||| || |||| ||||||||| || ||||||| |
|
|
| T |
24104553 |
ttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatg |
24104454 |
T |
|
| Q |
406 |
gtttaactccgatagaaggcgatggtgatgttagtcaagacatata |
451 |
Q |
| |
|
|| ||||||| || |||||| |||||||||||| |||||||||||| |
|
|
| T |
24104453 |
gtctaactccaatggaaggcaatggtgatgttactcaagacatata |
24104408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 211 - 443
Target Start/End: Complemental strand, 1311 - 1079
Alignment:
| Q |
211 |
cacatgcagtgttgattccatatccacttcaaggacatataactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgt |
310 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||||| | |||||| | | ||||||||| ||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
1311 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1212 |
T |
|
| Q |
311 |
caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcctttgatggtttcaccgattttacctttgagactattccagatggttta |
410 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| || || ||||||||| || |
|
|
| T |
1211 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1112 |
T |
|
| Q |
411 |
actccgatagaaggcgatggtgatgttagtcaa |
443 |
Q |
| |
|
|| || ||||||| |||||||||||||||||| |
|
|
| T |
1111 |
acaccactagaaggtgatggtgatgttagtcaa |
1079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 498 - 606
Target Start/End: Original strand, 3384 - 3492
Alignment:
| Q |
498 |
gaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgatattagcatgtattttacaatacaagctg |
597 |
Q |
| |
|
|||||||||| || |||| |||||||||||||| |||||||||| || | ||||||||||||||| ||||| | |||| ||||| |||||||||| |
|
|
| T |
3384 |
gaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctg |
3483 |
T |
|
| Q |
598 |
ctgaagaac |
606 |
Q |
| |
|
||||||||| |
|
|
| T |
3484 |
ctgaagaac |
3492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 1349579 - 1349636
Alignment:
| Q |
298 |
acataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
355 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||||||||| |||||||| | |||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcc |
1349636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 524 times since January 2019
Visitors: 2229