View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-3 (Length: 569)
Name: NF0175-Insertion-3
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 52262604 - 52262300
Alignment:
| Q |
8 |
cttatgcacataagaatcttacttggacgcagcacgcgtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagg |
107 |
Q |
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| T |
52262604 |
cttatgcacataagaatcttacttggacgcagcacgcgtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagg |
52262505 |
T |
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| Q |
108 |
gaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgaga |
207 |
Q |
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| T |
52262504 |
gaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgaga |
52262405 |
T |
|
| Q |
208 |
aatgagaagatggatcctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggata |
307 |
Q |
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| T |
52262404 |
aatgagaagatggat-ctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggata |
52262306 |
T |
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| Q |
308 |
atattg |
313 |
Q |
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|||||| |
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| T |
52262305 |
atattg |
52262300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 52250962 - 52250584
Alignment:
| Q |
8 |
cttatgcacataagaatcttacttggacgcagcacgcgtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagg |
107 |
Q |
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| T |
52250962 |
cttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaagg |
52250863 |
T |
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| Q |
108 |
gaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgaga |
207 |
Q |
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| T |
52250862 |
aaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgagg |
52250763 |
T |
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| Q |
208 |
aatgagaagatggatcctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggata |
307 |
Q |
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| T |
52250762 |
aatgagaagatggatcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggata |
52250663 |
T |
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| Q |
308 |
atattgctcatgacttgttgcatcgtggccgtgctggcaatacttttctatagg----tttatgttttctgttatgtca |
382 |
Q |
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| T |
52250662 |
atattgctcatgatttgttgcatcgtggtcgtgttggcaatacttttttataagtttttttatgttttctgttatgtca |
52250584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 52262277 - 52262179
Alignment:
| Q |
369 |
tttctgttatgtcaaatgatttcaatattttagctatgacttattactagtcattcatattagagaagaacaagactatattgtgtggatctattgtta |
467 |
Q |
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| T |
52262277 |
tttctattatgtcaaatgatttcaatattttagctatgacttattactagtcattcatattagagaagaacaagactatattgtgtggatctattgtta |
52262179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 510 - 569
Target Start/End: Complemental strand, 52262173 - 52262114
Alignment:
| Q |
510 |
tagtttatttgatggagacatcagtttacaagggcgcggatttgaactcacgactttcca |
569 |
Q |
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| T |
52262173 |
tagtttatttgatggagacatctgtttacaagggcgcggatttgaactcacgactttcca |
52262114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 3698843 - 3698992
Alignment:
| Q |
77 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttg |
176 |
Q |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| | | ||||||||| | | |||||||| |
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| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttg |
3698942 |
T |
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| Q |
177 |
ttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
226 |
Q |
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| T |
3698943 |
ttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 3702531 - 3702680
Alignment:
| Q |
77 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
175 |
Q |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| || | ||||||||| || || | ||||| |
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| T |
3702531 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
3702629 |
T |
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| Q |
176 |
gttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
226 |
Q |
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| T |
3702630 |
gttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3702680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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