View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-4 (Length: 560)
Name: NF0175-Insertion-4
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 208 - 560
Target Start/End: Original strand, 27099331 - 27099684
Alignment:
| Q |
208 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
307 |
Q |
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| T |
27099331 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
27099430 |
T |
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| Q |
308 |
gtcaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaac |
407 |
Q |
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| T |
27099431 |
gccaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaac |
27099530 |
T |
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| Q |
408 |
catttaatcttgatccaacgaccacgaatgtattgtctacatgaatgtttcaaaattttgatggaagg-aaataccattccttgaaggaggtcatattaa |
506 |
Q |
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| T |
27099531 |
catttaatcttaatccaacgaccacgaatgtattgtctacatgaatgcttcaaaattttgatggaaggaaaataccattccttgaaggaggtcatattaa |
27099630 |
T |
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| Q |
507 |
ttttgaaatgacatgaaagggtgtggttggataggatatttacagtgttcccca |
560 |
Q |
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| T |
27099631 |
ttttgaaatgacatgaaagggtgtggttggataggatatttacagtgttcccca |
27099684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 27099131 - 27099288
Alignment:
| Q |
8 |
gtttaccgcggatggcgatgagtcatcgatggtgaattcaccgcagccgtcggtggcgtagcttccaaggcttgctgcatggtttcttaaacactctctg |
107 |
Q |
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| T |
27099131 |
gtttaccgcggatggcgatgagtcgtcgatggtgaattcaccgcagccgtcggtggcgtagcttccaaggcttgctgcatggtttcttaaacactctctg |
27099230 |
T |
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| Q |
108 |
tagatatagttttgtgaatgtgatgatgaagatgataacattcctcctccttccattg |
165 |
Q |
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| T |
27099231 |
tagatatagttttgtgaatgtgatgatgaagatgataacattcctcctccttccattg |
27099288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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