View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-6 (Length: 437)
Name: NF0175-Insertion-6
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 160 - 437
Target Start/End: Complemental strand, 4354167 - 4353882
Alignment:
| Q |
160 |
gttttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactaatgcttctacacctgcattct |
259 |
Q |
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| T |
4354167 |
gttttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactgatgcttctacacctgtattct |
4354068 |
T |
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| Q |
260 |
ttgcacatgctacaacaaaaaatatcttaatatgttctaatga-------ttctatt-ctaatctcatattgtataatcattcattccatgtatgtaaca |
351 |
Q |
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| T |
4354067 |
ttgcacatgctacaacaaaaaatatcttaatatgttcttatgagttatgattctatttctaatctcatattgtataatcattcattccatgtatgtaaca |
4353968 |
T |
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| Q |
352 |
ttacaatctcagcaacactcgatttactttgtcgctagcttatcatccatctttgattccatacaacaatacaaatcctatagttg |
437 |
Q |
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| T |
4353967 |
ttacaatctcagcaacactcgatttactttgtcgctagcttatcatccatctttgattccatacaacaatacaaatcctatagttg |
4353882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 4354466 - 4354327
Alignment:
| Q |
8 |
ggaacatggacaaattcacacatgaagaagtgatccaactccatgcgctttgtgcagtgaaggcatgaagcatatgattactgtcactgaaaactttcac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4354466 |
ggaacatggacaaattcacacatgaagaagtgatccaactccatgcgctttgtgaagtgaaggcatgaagcatatgattactgtcactgaaaactttcac |
4354367 |
T |
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| Q |
108 |
tcaaggctttgagagcagggttaggatccatagtgtgtta |
147 |
Q |
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| T |
4354366 |
tcaaggctttgagagcaggtttaggatccatagtgtgtta |
4354327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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