View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-7 (Length: 340)
Name: NF0175-Insertion-7
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 46698954 - 46698620
Alignment:
| Q |
7 |
acgtttatcgataccgtattaaaatatttttatagaggaccatattagaatatttgttttgttcatgatgtcaaaatacacaattatgtggctagtcaca |
106 |
Q |
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| T |
46698954 |
acgtttatcgataccgtattaaaatatttttatagaggaccatattagaatatttgttttgttcatgatgtcaaaatacacaattatgtggctagtcaca |
46698855 |
T |
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| Q |
107 |
ctggctatnnnnnnntaactgattttctaaaattgtactaatattttgatttcaaaatattctaacaaaataaatacaaatttgttcattcatccgattt |
206 |
Q |
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| T |
46698854 |
ctggctataaaaatataactgattttttaaaattgtactaatattttgatttctaaatattctaacaaaataaatacaaatttgttcattcatccgattt |
46698755 |
T |
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| Q |
207 |
gatgtcaaaataaacaattatgtggccagtatattggttataaaaatataactgattttctaaaattgtgccaacacttgattcctaaa-aaattttgcc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
46698754 |
gatgtcaaaataaacaattatgtggccagtatattggttataaaaatataactgattttctaaaattgtgccaacacttgattcctaaatattttttgcc |
46698655 |
T |
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| Q |
306 |
agaattatcttttgtttgtttgttaccgtctgcta |
340 |
Q |
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| T |
46698654 |
agaattatcttttgtttgtttgttaccgtctgcta |
46698620 |
T |
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