View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-8 (Length: 353)
Name: NF0175-Insertion-8
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 24479847 - 24480208
Alignment:
| Q |
8 |
gacttcttgtcgcaatctttgatggcaagttttctgaagcatatcatcgtatctctaatatcaaacagctagctctgaagtatattttcgtgtgatgtgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24479847 |
gacttcttgtcgcaatctttgatggcaagttttctgaagcatatcatcgtatctctaatatcaaacagctagctttgaagtatattttcgtgtgatgtgt |
24479946 |
T |
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| Q |
108 |
tgttcctcccaa-------------caaatattgtaactacaaaaattcacattcgcaaaggtaaacatgagacacttgtactatatatgatatgatggg |
194 |
Q |
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| T |
24479947 |
tgttcctcccaagggaaaatgttctcaaatattgtaactacaaaaattcacattcgcaaaggtaaacatgagacacttatactatatatgatatgatggg |
24480046 |
T |
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| Q |
195 |
caaggatcctttagagtgggcaatgcaagtgtcaaattttaatatttaagtattattgcttctataatttgagcgaatttcagtttacgtctgtcatata |
294 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
24480047 |
caaggatcctttagagtgagcaatgcaagtgtcaaattttaatatttaagtattatcgctcctataatttgagcgaatttcagtttacctctgtcatata |
24480146 |
T |
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| Q |
295 |
ctattttttagagttataagaatcttccaattggaagacaaaacac---atgtttgattcat |
353 |
Q |
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| T |
24480147 |
ctattttttagagttataagaatcttccaattggaagacaaaacacgttatgtttgattcat |
24480208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 24692232 - 24692182
Alignment:
| Q |
120 |
caaatattgtaactacaaaaattcacattcgcaaaggtaaacatgagacac |
170 |
Q |
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| T |
24692232 |
caaatattgtaactacaaaaattcacatttgcaaaggtaaacatgagacac |
24692182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 24692316 - 24692266
Alignment:
| Q |
7 |
agacttcttgtcgcaatctttgatggcaagttttctgaagcatatcatcgt |
57 |
Q |
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| T |
24692316 |
agacttcttgtcgcaacgtttaatggcaagttttctgaagcacatcatcgt |
24692266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 41370434 - 41370606
Alignment:
| Q |
8 |
gacttcttgtcgcaatctttgatggcaagttttctgaagcatatcatcgtatctctaatatcaaacagctagctctgaagtata-ttttcgtgtgatgtg |
106 |
Q |
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||||| |||| |||| ||||||||||||||||||||| |||||||| ||||||||| | |||||| | ||| ||||||| |||||||||||| || |
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| T |
41370434 |
gactttttgttgcaaagtttgatggcaagttttctgaaacatatcattgtatctctactgtcaaac----aactccaaagtatatttttcgtgtgatttg |
41370529 |
T |
|
| Q |
107 |
ttgttcctcccaa-------------caaatattgtaactacaaaaattcacattcgcaaaggtaaacatgagacac |
170 |
Q |
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| T |
41370530 |
ctattcctcccaaggtaaaatatcctcaaatatcgtagctgcaaaaattcacattcgcaaaggtaaacatgatacac |
41370606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 15835209 - 15835140
Alignment:
| Q |
8 |
gacttcttgtcgcaatctttgatggcaagttttctgaagcatatcatcgtatctctaatatcaaacagct |
77 |
Q |
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||||||||||| ||| |||||||||||| ||| |||||||||||||| ||||||| || ||||||||| |
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| T |
15835209 |
gacttcttgtcacaaggtttgatggcaagatttttgaagcatatcatcacatctctactaccaaacagct |
15835140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 15835087 - 15835035
Alignment:
| Q |
120 |
caaatattgtaactacaaaaattcacattcgcaaaggtaaacatgagacactt |
172 |
Q |
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| T |
15835087 |
caaatatcgtaactacaaaaattcacattcacaggtgtaaacatgagacactt |
15835035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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