View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175-Insertion-9 (Length: 222)
Name: NF0175-Insertion-9
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 38996457 - 38996243
Alignment:
| Q |
8 |
aatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgataatagcatccatcaaatccaaatcaacctcatgaaaaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38996457 |
aatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgataatagcatccatcaaatccaaatcaacctcatgaaaaaat |
38996358 |
T |
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| Q |
108 |
ctagcataagggtaagccacaccagcactattaactaaaattcccacatctaaaccatatattgcttcttttactcttttcattatttcctctccactaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38996357 |
ctagcataagggtaagccacaccagcactattaactaaaattcccacatctaaaccatatattgcttcttctactcttttcattatttcctctccactaa |
38996258 |
T |
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| Q |
208 |
tattttgcatgtcta |
222 |
Q |
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||||||||||||||| |
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| T |
38996257 |
tattttgcatgtcta |
38996243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 39001088 - 39000874
Alignment:
| Q |
8 |
aatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgataatagcatccatcaaatccaaatcaacctcatgaaaaaat |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39001088 |
aatcatactaggaagcacagctttagtaatccaagttgttccttcaacattcactttgataatagtatccatcaaatccaaatcaacctcatgaaaaaat |
39000989 |
T |
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| Q |
108 |
ctagcataagggtaagccacaccagcactattaactaaaattcccacatctaaaccatatattgcttcttttactcttttcattatttcctctccactaa |
207 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| || | ||||||||||||||||||||| |
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| T |
39000988 |
ctagcataaggataagccacaccagcaccattaactaaaattccaacatctaaaccatctatagcttcttcaaccttattcattatttcctctccactat |
39000889 |
T |
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| Q |
208 |
tattttgcatgtcta |
222 |
Q |
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||||||||| ||||| |
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| T |
39000888 |
tattttgcaagtcta |
39000874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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