View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175_low_2 (Length: 275)
Name: NF0175_low_2
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 22517291 - 22517098
Alignment:
| Q |
53 |
gtgttcccttgacagtattatattttgacatcaactttcttcgccttgtttctggtgaccaaagtggaatgatcttggatggacagtgtgaaccaattac |
152 |
Q |
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| T |
22517291 |
gtgttcccttgacagtattatattttgacatcaactctcttcgccttgtttctggtgaccaaagtggaatgatcttggatggacagtgtgaaccaattac |
22517192 |
T |
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| Q |
153 |
aagaattttgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctc |
246 |
Q |
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| T |
22517191 |
aagaattttgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgcggtgtttgtggctctgtgctc |
22517098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 416635 - 416720
Alignment:
| Q |
161 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctc |
246 |
Q |
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| T |
416635 |
tgcaagacgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgacgtgaggtgtggtgtttgtgggcctgtgctc |
416720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 405464 - 405539
Alignment:
| Q |
161 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtgg |
236 |
Q |
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| T |
405464 |
tgcaagatgtgatagcaggttcatataattttgtgtgtgctcacggaagtcgtgatgtgaggtgtggtgtttgtgg |
405539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 399897 - 399821
Alignment:
| Q |
161 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcga-cgtgaggtgtggtgtttgtgg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||| |
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| T |
399897 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgattgtaaggtgtgctgtttgtgg |
399821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 9710003 - 9709941
Alignment:
| Q |
61 |
ttgacagtattatattttgacatcaactttcttcgccttgtttctggtgaccaaagtggaatg |
123 |
Q |
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| T |
9710003 |
ttgacagaattatattttgacatcaagtctcttctcctggtttctggtgaccagagtggaatg |
9709941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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