View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0175_low_4 (Length: 257)
Name: NF0175_low_4
Description: NF0175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0175_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 416657 - 416868
Alignment:
| Q |
1 |
atatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgagga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
416657 |
atatatttttgtgtgtgctcatggaagtcgtgacgtgaggtgtggtgtttgtgggcctgtgctcattgacaagttcaatgaagaagttcagctccgagga |
416756 |
T |
|
| Q |
101 |
ttgaaagatcagatatcagttttggcatgttaccatattggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaatta |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
416757 |
ttgaaagatcagatatcagttttggcatgttctcatattggtggtcataagtatgctggcaatttaatcacatttagtcatggaccagatggaaaaatta |
416856 |
T |
|
| Q |
201 |
tgggtcattggt |
212 |
Q |
| |
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|||||||||||| |
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| T |
416857 |
tgggtcattggt |
416868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 398598 - 398485
Alignment:
| Q |
46 |
tgtttgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgaggattgaaagatcagatatcagttttggcatgttaccatattggtggt |
145 |
Q |
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||||||||| |||| |||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
398598 |
tgtttgtggacctgttctcattgacaagctcaatgaagacattcagctcagaggattgaaagatcagatatcagttatggcatgctctcatattggtggt |
398499 |
T |
|
| Q |
146 |
cataactatgctgg |
159 |
Q |
| |
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||||| |||||||| |
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| T |
398498 |
cataaatatgctgg |
398485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 405486 - 405599
Alignment:
| Q |
1 |
atatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgagga |
100 |
Q |
| |
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||||| ||||||||||||||| |||||||| || |||||||||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||| |
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| T |
405486 |
atataattttgtgtgtgctcacggaagtcgtgatgtgaggtgtggtgtttgtgggcctgttctcattgacaagctcaatgaagaaattcagctcaaagga |
405585 |
T |
|
| Q |
101 |
ttgaaagatcagat |
114 |
Q |
| |
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|| ||||||||||| |
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|
| T |
405586 |
tttaaagatcagat |
405599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 399875 - 399821
Alignment:
| Q |
1 |
atatatttttgtgtgtgctcatggaagtcgcga-cgtgaggtgtggtgtttgtgg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||| ||||||||| |
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|
| T |
399875 |
atatatttttgtgtgtgctcatggaagtcgtgattgtaaggtgtgctgtttgtgg |
399821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22517161 - 22517025
Alignment:
| Q |
1 |
atatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgtggtgtttgtggctctgtgctcattgacaagttcaaaaaagaaattcagctccgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22517161 |
atatatttttgtgtgtgctcatggaagtcgcgacgtgaggtgcggtgtttgtggctctgtgctcattgacaagttcaaagaagaaattcagctccgagga |
22517062 |
T |
|
| Q |
101 |
ttgaaagatcagatatcagttttggcatgttaccata |
137 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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|
| T |
22517061 |
ttgaaagatcagatatcagttttggcatgttatcata |
22517025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 22513814 - 22513714
Alignment:
| Q |
137 |
attggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttactcgtgatgatg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22513814 |
attggtggtcataactatgctggtaatttaatcacatttaatcatggaccagatggaaaaattatgggtcattggtatggctatgttactcgtaatgatg |
22513715 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
|
| |
|
|
| T |
22513714 |
t |
22513714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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