View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0177_high_1 (Length: 458)
Name: NF0177_high_1
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0177_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 40565802 - 40565513
Alignment:
| Q |
1 |
gaataggtcagaactcagaatgcacacctgtgttagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaattacta--- |
97 |
Q |
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| T |
40565802 |
gaataggtcagaactcagaatgcacacctgtgttagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaattactacta |
40565703 |
T |
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| Q |
98 |
tatagtcatgtttatataatatgtccagtcaaaaatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgt |
197 |
Q |
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| T |
40565702 |
tatagtcatgtttatataatatgtccagtcaaaaatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgt |
40565603 |
T |
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| Q |
198 |
tgagtagttgtgattctaaacgtga---atttgtacacatatttatattataaatggtctaatccttttgatcgatcatgataatgttatatat |
288 |
Q |
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| T |
40565602 |
tgagtagttatgattctaaacgtgaattatttgtatacatatttatattataaatggtctaatcctttt----gatcatgataatgttatatat |
40565513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 40570336 - 40570283
Alignment:
| Q |
110 |
tatataatatgtccagtcaaaaatattg-ttatatattctgtttttgtcaaaaa |
162 |
Q |
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| T |
40570336 |
tatatattatttccagtcaaaaatattgtttatatattatgtttctgtcaaaaa |
40570283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 8490077 - 8490036
Alignment:
| Q |
98 |
tatagtcatgtttatataatatgtccagtcaaaaatattgtt |
139 |
Q |
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| T |
8490077 |
tatagtcatgtttatatattatgtccagtcaaaaatattgtt |
8490036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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