View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0177_low_11 (Length: 262)

Name: NF0177_low_11
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0177_low_11
NF0177_low_11
[»] chr8 (12 HSPs)
chr8 (119-194)||(14646979-14647054)
chr8 (26-91)||(14646875-14646940)
chr8 (125-194)||(14665646-14665715)
chr8 (167-223)||(14647063-14647119)
chr8 (122-194)||(12080650-12080721)
chr8 (122-193)||(12109692-12109764)
chr8 (122-193)||(12070787-12070860)
chr8 (120-194)||(14664359-14664433)
chr8 (48-91)||(14631914-14631957)
chr8 (154-211)||(14632033-14632090)
chr8 (154-211)||(14638626-14638683)
chr8 (32-91)||(14665538-14665598)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 14646979 - 14647054
Alignment:
Q  119 atttgcaacttttcactttggaccataaacccccaccttttcttttaaagtgatgggcaattatgtaatttaaaat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14646979 atttgcaacttttcactttggaccataaacccccaccttttcttttaaagtgatgggcaattatgtaatttaaaat 14647054  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 14646875 - 14646940
Alignment:
Q  26 aacctgtgtgagttgatgtatagtgaagagcagacagtggaaagaacaagtgggtagcagcggcta 91  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14646875 aacctgtgtgagttgatgtatagtgaagagcagccagtggaaagaacaagtgggtagcagcggcta 14646940  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 14665646 - 14665715
Alignment:
Q  125 aacttttcactttggaccataaacccccaccttttcttttaaagtgatgggcaattatgtaatttaaaat 194  Q
    ||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14665646 aacttttcattttggaccaaaaacccccagtttttcttttaaagtgatgggcaattatgtaatttaaaat 14665715  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 14647063 - 14647119
Alignment:
Q  167 agtgatgggcaattatgtaatttaaaattccatatttttaattaatgttgtattcat 223  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14647063 agtgatgggtaattttgtaatttaaaattccatatttttaattaatgttgtattcat 14647119  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 12080650 - 12080721
Alignment:
Q  122 tgcaacttttcactttggaccataaacccccaccttttcttttaaagtgatgggcaattatgtaatttaaaat 194  Q
    ||||| |||||| ||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  12080650 tgcaaattttcaatttggacca-aaagccccatattttcttttaaagtgatgggcaattatgtaatttaaaat 12080721  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 12109692 - 12109764
Alignment:
Q  122 tgcaacttttcactttggaccataaaccccc-accttttcttttaaagtgatgggcaattatgtaatttaaaa 193  Q
    |||||||||||||||||||||| |||| ||| ||| |||||||||||||| ||||||| ||||||||||||||    
T  12109692 tgcaacttttcactttggaccaaaaacaccctaccatttcttttaaagtggtgggcaaatatgtaatttaaaa 12109764  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 12070787 - 12070860
Alignment:
Q  122 tgcaacttttcactttggaccataaaccccc--accttttcttttaaagtgatgggcaattatgtaatttaaaa 193  Q
    ||||| |||||||||||||||| |||| |||  |||||||||||| ||||||||||||| ||||||||||||||    
T  12070787 tgcaagttttcactttggaccaaaaacacccgcaccttttctttttaagtgatgggcaaatatgtaatttaaaa 12070860  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 14664433 - 14664359
Alignment:
Q  120 tttgcaacttttcactttggaccataaacccccaccttttcttttaaagtgatgggcaattatgtaatttaaaat 194  Q
    |||||||||||||| ||||||||| ||||| | |  |||||||||||||||||||| ||||||| |||| |||||    
T  14664433 tttgcaacttttcattttggaccaaaaacctcgagtttttcttttaaagtgatgggaaattatgaaattcaaaat 14664359  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 14631914 - 14631957
Alignment:
Q  48 gtgaagagcagacagtggaaagaacaagtgggtagcagcggcta 91  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  14631914 gtgaagagcggccagtggaaagaacaagtgggtagcagcggcta 14631957  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 14632033 - 14632090
Alignment:
Q  154 ccttttcttttaaagtgatgggcaattatgtaatttaaaattccatatttttaattaa 211  Q
    ||||||||||||||  |||||| |||||||||||||| ||||  |||||||| |||||    
T  14632033 ccttttcttttaaaaagatgggtaattatgtaatttagaatttaatattttttattaa 14632090  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 14638626 - 14638683
Alignment:
Q  154 ccttttcttttaaagtgatgggcaattatgtaatttaaaattccatatttttaattaa 211  Q
    ||||||||||||||  |||||| |||||||||| ||||||||  |||||||| |||||    
T  14638626 ccttttcttttaaaaagatgggtaattatgtaacttaaaatttaatattttttattaa 14638683  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 14665538 - 14665598
Alignment:
Q  32 tgtgagttgatgtatagtgaagagcagacagtggaaagaacaa-gtgggtagcagcggcta 91  Q
    |||||||||||||||| ||| |||| | |||||||||||||||  |||||||| |||||||    
T  14665538 tgtgagttgatgtatattgatgagcggtcagtggaaagaacaacttgggtagctgcggcta 14665598  T

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