View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0177_low_16 (Length: 224)
Name: NF0177_low_16
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0177_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 25558449 - 25558552
Alignment:
| Q |
79 |
atgtaaggctgatagtaaaagttttaaactaagcccaataagcccattacacaacctgttaaaaacaaaacacaactcttaaatccctatttcacaacac |
178 |
Q |
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| T |
25558449 |
atgtaaggctggtagtaaaagttttaaactaagcctaataagcccattacacaacctgttaaaaacaaaacacaactcctaaatccctatttcacaacac |
25558548 |
T |
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| Q |
179 |
aggt |
182 |
Q |
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|||| |
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| T |
25558549 |
aggt |
25558552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25558100 - 25558173
Alignment:
| Q |
1 |
aattaaatcccctaaaacacaaataggtaattttaattaagaaaaaagagcaaaattatatccattttagcaatta |
76 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25558100 |
aattaaatcccctaaaacacaaataggtaatt--aattaagaaaaaagagcaaaattagatccattttagcaatta |
25558173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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