View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0177_low_3 (Length: 388)

Name: NF0177_low_3
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0177_low_3
NF0177_low_3
[»] scaffold0007 (1 HSPs)
scaffold0007 (230-375)||(182280-182425)
[»] chr4 (9 HSPs)
chr4 (230-375)||(20395747-20395892)
chr4 (110-234)||(34979273-34979397)
chr4 (232-377)||(42778387-42778532)
chr4 (232-382)||(53486799-53486949)
chr4 (232-383)||(53780188-53780339)
chr4 (232-382)||(18106402-18106552)
chr4 (232-382)||(34322165-34322315)
chr4 (256-375)||(10563179-10563298)
chr4 (278-382)||(30273704-30273808)
[»] chr8 (4 HSPs)
chr8 (232-382)||(23680306-23680456)
chr8 (232-377)||(17658980-17659125)
chr8 (232-375)||(45255675-45255817)
chr8 (232-372)||(36157311-36157451)
[»] chr5 (4 HSPs)
chr5 (232-375)||(20208565-20208708)
chr5 (232-383)||(6049366-6049517)
chr5 (232-377)||(4415546-4415691)
chr5 (232-377)||(7000611-7000756)
[»] chr3 (9 HSPs)
chr3 (232-383)||(47537411-47537562)
chr3 (232-375)||(26846018-26846161)
chr3 (232-382)||(48191943-48192093)
chr3 (235-375)||(50544375-50544515)
chr3 (304-382)||(33121235-33121313)
chr3 (232-342)||(43121512-43121622)
chr3 (240-340)||(23818763-23818863)
chr3 (320-359)||(19222260-19222299)
chr3 (241-309)||(27924921-27924989)
[»] chr6 (6 HSPs)
chr6 (232-382)||(17079037-17079187)
chr6 (232-375)||(17873664-17873807)
chr6 (232-375)||(18051295-18051438)
chr6 (232-377)||(9199098-9199243)
chr6 (232-375)||(11060708-11060848)
chr6 (232-320)||(649912-650000)
[»] chr1 (7 HSPs)
chr1 (232-382)||(17708123-17708273)
chr1 (232-377)||(10711007-10711152)
chr1 (232-383)||(47106527-47106677)
chr1 (232-382)||(30110771-30110921)
chr1 (266-375)||(26720812-26720921)
chr1 (232-373)||(21335216-21335357)
chr1 (232-339)||(28097809-28097916)
[»] chr2 (3 HSPs)
chr2 (232-377)||(1380231-1380376)
chr2 (232-382)||(2999594-2999744)
chr2 (232-333)||(11028063-11028164)
[»] scaffold0179 (2 HSPs)
scaffold0179 (232-375)||(7679-7822)
scaffold0179 (232-375)||(12613-12756)
[»] chr7 (4 HSPs)
chr7 (232-375)||(4077426-4077569)
chr7 (232-382)||(34231843-34231993)
chr7 (232-375)||(7458517-7458660)
chr7 (246-285)||(36228010-36228049)
[»] scaffold0912 (1 HSPs)
scaffold0912 (232-313)||(2719-2799)


Alignment Details
Target: scaffold0007 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 182425 - 182280
Alignment:
Q  230 gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt 329  Q
    |||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  182425 gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt 182326  T
Q  330 gggtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  182325 gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 182280  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 20395892 - 20395747
Alignment:
Q  230 gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt 329  Q
    |||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  20395892 gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt 20395793  T
Q  330 gggtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  20395792 gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 20395747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 34979397 - 34979273
Alignment:
Q  110 agaacctgtggtagttgactatcgttatgagttcatctttgacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagacgctcta 209  Q
    |||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34979397 agaaccagcggtagttaactatcgttatgagttcatctttaacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagatgctcta 34979298  T
Q  210 cacgtttcttgatgtcaaatgtgtg 234  Q
    |||||||||||||||||||||||||    
T  34979297 cacgtttcttgatgtcaaatgtgtg 34979273  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 42778532 - 42778387
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42778532 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattctgtttcagataggtgg 42778433  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    || ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  42778432 gtttggttgccagatcctattgtgggttactctgttcgcggttcat 42778387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 53486799 - 53486949
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||     
T  53486799 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcgagattttgtttcagacaggtga 53486898  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| ||| ||||||| | ||||| ||||||| ||||    
T  53486899 gtgtggttgccagaccctattgtgggttactctgttcgtggttcatatcac 53486949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 53780339 - 53780188
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || || ||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  53780339 gtggaggaggaggttgtgggcatgggaggaggaggaattataggagtatagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg 53780240  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 383  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||| |||||    
T  53780239 gtgtggttgccagatcctattcagggttacactgttcgcggttcatatcact 53780188  T

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Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 18106402 - 18106552
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  18106402 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 18106501  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  18106502 gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 18106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 34322165 - 34322315
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  34322165 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagagccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 34322264  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  34322265 gtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 34322315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 10563179 - 10563298
Alignment:
Q  256 ggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgag 355  Q
    |||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| || ||    
T  10563179 ggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgttttagacaggtgggtgtggttgccagatcctattcag 10563278  T
Q  356 ggttacacagttcgcggttc 375  Q
    |||||||| |||||||||||    
T  10563279 ggttacactgttcgcggttc 10563298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 30273704 - 30273808
Alignment:
Q  278 tgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||| |||||||    
T  30273704 tgtagggccttattgattgatatttttttgcaagattttgtttcagacaggtgggtgtggttgccagacccttttgtgggttactctgttcgtggttcat 30273803  T
Q  378 ctcac 382  Q
     ||||    
T  30273804 atcac 30273808  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 23680456 - 23680306
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||| | ||||||| ||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  23680456 gtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgctagattctgtttcagacaggtgg 23680357  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  23680356 gtgtggttgccagaccctgttgagggttacactgttcgcggttcatatcac 23680306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 17659125 - 17658980
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||  |||||||||||||||||| ||| |||||||||||| || ||||||    
T  17659125 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggttttattgactgatgtttctctgctagattttgtttctgacaggtgg 17659026  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    ||||||||||  |||||| ||||||||||||| ||| | |||||||    
T  17659025 gtgtggttgcttgaccctattgagggttacactgtttgtggttcat 17658980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 45255675 - 45255817
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| || |||||||||||||| || |||||| |||||| |||||  || ||| ||||||||||||||||||||||||||||||| ||||||    
T  45255675 gtggaggaggaggttatgggcttgggaggaggaggagttagaggagt-tagggttttgttggctgatgtttctttgcaagattttgtttcagacaggtgg 45255773  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    |||||||||||||||||| ||||||| || || |||||||||||    
T  45255774 gtgtggttgccagaccctattgagggctatactgttcgcggttc 45255817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 372
Target Start/End: Complemental strand, 36157451 - 36157311
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | ||| ||  ||||||||||||| | | |  | ||||||| | ||||    
T  36157451 gtggaggaggagtttgtgggcgtgggaggaagaggagttagaggagtgtaggactttactgcttgatgtttctttgtatgctaatatttcagacaagtgg 36157352  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcgg 372  Q
    || ||||| || ||||||  ||| || ||| ||||||||||    
T  36157351 gtttggttaccggacccttctgaagggtactcagttcgcgg 36157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 20208565 - 20208708
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  20208565 gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttatgtttcagacaggtgg 20208664  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  20208665 gtgtggttgccagaccctgttgagggttacactgttcgcggttc 20208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 6049517 - 6049366
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| || | |||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||    
T  6049517 gtggaggaggaggttataggcttgggagaaggaggagttaaaggagtgtagggctttattgactgatgtttctttgcaagattttttttccgacaggtgg 6049418  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 383  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||| |||||    
T  6049417 gtgtggttgccagaccctgttaagggttatactgttcgcggttcatatcact 6049366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 4415546 - 4415691
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  4415546 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 4415645  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    |||||||||||||||||| | | ||||||| | ||||| |||||||    
T  4415646 gtgtggttgccagaccctttggtgggttactctgttcgtggttcat 4415691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 7000611 - 7000756
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    ||||| |||||| |||||| |||||||| | || |||||| ||||||||||||| ||||||| |||||||||| ||| ||||| ||||||||| | ||||    
T  7000611 gtggaagaggaggttgtggtcttgggagaaggaggagttagaggagtgtagggctttattgattgatgtttctctgctagattctgtttcagacaagtgg 7000710  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    |||||||||||||||||   |||||||||||| |||||||||||||    
T  7000711 gtgtggttgccagaccccactgagggttacactgttcgcggttcat 7000756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 47537562 - 47537411
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| | ||| ||||||||||| ||| ||||||    
T  47537562 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttttctgctagattttgttttagacaggtgg 47537463  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 383  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  47537462 gtgtggttgccagaccctgttgagggttacactgttcgtggttcatatcact 47537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 26846161 - 26846018
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  26846161 gtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 26846062  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  26846061 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 26846018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 48192093 - 48191943
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  48192093 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 48191994  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||| ||||||||| | | ||||||| | ||||| ||||||| ||||    
T  48191993 gtgtggtttccagaccctttggtgggttactctgttcgtggttcatatcac 48191943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 50544515 - 50544375
Alignment:
Q  235 gaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtg 334  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||| ||||||| ||||||||||| || ||||||    
T  50544515 gaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtatgactttattgactgatgtttctctgcaagaatttgtttcagacagatgggtg 50544416  T
Q  335 tggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||| |||||||||||| |||||||||| |||||||||||||    
T  50544415 tggctgccagaccctggtgagggttactcagttcgcggttc 50544375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 33121235 - 33121313
Alignment:
Q  304 tttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  33121235 tttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 33121313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 43121512 - 43121622
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    ||||||| || |||||||||| |||||||| || ||||||||||| |||||| | ||||||  |||||||||| |||| | |  ||||||||| | ||||    
T  43121512 gtggaggcggggattgtgggcgtgggaggaggaggagttaaaggaatgtaggactttattgcttgatgtttctctgcatgctaatgtttcagacaagtgg 43121611  T
Q  332 gtgtggttgcc 342  Q
    || ||||||||    
T  43121612 gtttggttgcc 43121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 23818863 - 23818763
Alignment:
Q  240 ggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggtt 339  Q
    ||||||||||||| |||||||| || |||||| |||| |||| | | ||||||  ||||||||||||||| | |  ||||||||| |||||||| |||||    
T  23818863 ggagattgtgggcgtgggaggaggaggagttagaggaatgtatgactttattgcttgatgtttctttgcatgttaatgtttcagacaggtgggtttggtt 23818764  T
Q  340 g 340  Q
    |    
T  23818763 g 23818763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 19222260 - 19222299
Alignment:
Q  320 tcagataggtgggtgtggttgccagaccctgttgagggtt 359  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  19222260 tcagacaggtgggtgtggttgccagaccctgttgagggtt 19222299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 27924921 - 27924989
Alignment:
Q  241 gagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgca 309  Q
    ||||||||||||||||||||| || | |||| ||||||||| | | ||||||  |||||||||||||||    
T  27924921 gagattgtgggcttgggaggaggaggtgttagaggagtgtaagactttattgcttgatgtttctttgca 27924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 17079037 - 17079187
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||    
T  17079037 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagcgtagggctttattgactgatgtttctttgcaagattttgtttcagacaagtgg 17079136  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||| |||||||||||| || ||||| ||||||| ||||    
T  17079137 gtgtggttgccagaccttgttgagggttatactgttcgtggttcatatcac 17079187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 17873664 - 17873807
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  17873664 gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg 17873763  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    |||||||||||||| ||| || |||||||||| |||||||||||    
T  17873764 gtgtggttgccagatcctattcagggttacactgttcgcggttc 17873807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 18051295 - 18051438
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  18051295 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactaatgtttatttgcaagattttatttcagacaggtgg 18051394  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||| | |||||||||||||||||||| ||||| |||||    
T  18051395 gtgtggttgtctgaccctgttgagggttacactgttcgtggttc 18051438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 9199098 - 9199243
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| ||  ||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  9199098 gtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggcattattgactgatgtttctttgcgagattctgtttcagacaggtgg 9199197  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    || ||||||||||||| | ||| ||||||| | |||||||||||||    
T  9199198 gtttggttgccagaccatattgtgggttactctgttcgcggttcat 9199243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 11060708 - 11060848
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| ||   |||| ||||||||||||  |||||||||||| ||||| ||| ||||| |||||| || ||||||    
T  11060708 gtggaggaggaggttgtgggcttgggaggagga---gttagaggagtgtagggatttattgactgatatttctctgctagattatgtttctgacaggtgg 11060804  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  11060805 gtgtggttgcctgacccttttgagggttacactgttcgcggttc 11060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 649912 - 650000
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgttt 320  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  649912 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgttt 650000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 17708273 - 17708123
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17708273 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagacagatgg 17708174  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||| ||||| ||| ||||||| | ||||| ||||||| ||||    
T  17708173 gtgtggttgccaaacccttttgtgggttactctgttcgtggttcatatcac 17708123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 10711007 - 10711152
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||||||||| || || |||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||    
T  10711007 gtggaggaggaggttgtgggcttgggaagaggaggagttagaggagtgtaggactttattaactgatgtttctttccaagattttgtttcagacaggtgg 10711106  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  10711107 gtgtggttgccagaccctgttgagggttacactgttcgtggttcat 10711152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 232 - 383
Target Start/End: Original strand, 47106527 - 47106677
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| || |||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  47106527 gtggaggaggaggttatgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttccgacaggtgg 47106626  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 383  Q
    |||||||||||||||||||||||||| |  || ||||||||||||| |||||    
T  47106627 gtgtggttgccagaccctgttgaggggt-tactgttcgcggttcatatcact 47106677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 30110771 - 30110921
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||    
T  30110771 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttctttgactgatgtttctctacaagattttgtttcagataggtgg 30110870  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||    
T  30110871 gtgtggttaccagacccttttgaggggtacacagttcggggttcatatcac 30110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 26720921 - 26720812
Alignment:
Q  266 gagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacag 365  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||| |    
T  26720921 gagttagaggagtgtagggctttattgactgatgtttctctgcaagtttttgtttcagacaggtgggtgtggtcgtcagaccctgttgagggttacactg 26720822  T
Q  366 ttcgcggttc 375  Q
    ||||||||||    
T  26720821 ttcgcggttc 26720812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 21335216 - 21335357
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||||| | | ||||||  ||||||||||||||| | |  ||||||||| ||||||    
T  21335216 gtggaggcggagattgtgggcttgggaggaagaggagttagaggagtgtaagactttattgcttgatgtttctttgcaggctaatgtttcagacaggtgg 21335315  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggt 373  Q
    || |||||||  |||||| |||| || ||| |||||||||||    
T  21335316 gtatggttgcaggacccttttgaagggtactcagttcgcggt 21335357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 28097809 - 28097916
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    ||||||||||||| ||||||  ||||||||||| |||| | |||||||||||   ||||||  |||||||| |||| | | |  ||||||||||||||||    
T  28097809 gtggaggaggagactgtgggggtgggaggaagaggagtaagaggagtgtaggaatttattgcttgatgtttatttgtatgctaatgtttcagataggtgg 28097908  T
Q  332 gtgtggtt 339  Q
    || |||||    
T  28097909 gtttggtt 28097916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 1380376 - 1380231
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1380376 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaaggccttattgactgatgtttctttgcaagattatgtttcagataggtgg 1380277  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 377  Q
    || ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  1380276 gtttggttgccagatcctattgtgggttactctgttcgcggttcat 1380231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 2999594 - 2999744
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2999594 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 2999693  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  2999694 gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 2999744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 333
Target Start/End: Complemental strand, 11028164 - 11028063
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    ||||||||||||| | | ||  ||||||||||| |||||| ||||||||||| | ||||||  ||||||||||||| | | |  ||||||||| ||||||    
T  11028164 gtggaggaggagactatcggtgtgggaggaagaggagttagaggagtgtaggactttattgcgtgatgtttctttgtatgctaatgtttcagacaggtgg 11028065  T
Q  332 gt 333  Q
    ||    
T  11028064 gt 11028063  T

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Target: scaffold0179 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 7822 - 7679
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  7822 gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 7723  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  7722 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 7679  T

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Target: scaffold0179; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 12756 - 12613
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  12756 gtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 12657  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  12656 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 12613  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 4077569 - 4077426
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||  |||||| ||||||||||||||||| ||||| ||||||    
T  4077569 gtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggctttattgtttgatgtgtctttgcaagattttgtgtcagacaggtgg 4077470  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    |||||||||| |||||||| |||||| || ||||||||||||||    
T  4077469 gtgtggttgctagaccctgctgagggctatacagttcgcggttc 4077426  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 34231993 - 34231843
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||| ||||| |||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  34231993 gtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgaatgatgtttctttgcaagattttgtttccgacaggtgg 34231894  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 382  Q
    |||||||||||||||||| | |  |||||| | ||||| ||||||| ||||    
T  34231893 gtgtggttgccagaccctttggtaggttactctgttcgtggttcatatcac 34231843  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 7458517 - 7458660
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 331  Q
    |||||||||||| |||||||| |||||||| || || ||| ||||||||||||| ||||| ||| |||||||| ||||||||| |||||| || ||||||    
T  7458517 gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattaactaatgtttctctgcaagattctgtttccgacaggtgg 7458616  T
Q  332 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 375  Q
    |||||||||||||| ||| || |||||||||| |||||||||||    
T  7458617 gtgtggttgccagatcctattcagggttacactgttcgcggttc 7458660  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 36228010 - 36228049
Alignment:
Q  246 tgtgggcttgggaggaagatgagttaaaggagtgtagggc 285  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  36228010 tgtgggcgtgggaggaagatgtgttaaaggagtgtagggc 36228049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 2719 - 2799
Alignment:
Q  232 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagat 313  Q
    |||||||||||| |||||||||||| |||| || |||||| |||||| |||||| |||||||||||||||||||||||||||    
T  2719 gtggaggaggaggttgtgggcttgg-aggaggaggagttagaggagtatagggctttattgactgatgtttctttgcaagat 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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