View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0177_low_4 (Length: 346)
Name: NF0177_low_4
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0177_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 51216394 - 51216702
Alignment:
| Q |
30 |
cttccaatcgaaactggaagttttgaacaattccttgtgaattgtgcatgatagtgttaaatcattcactatgtccaataacttgatgttttatattttg |
129 |
Q |
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| T |
51216394 |
cttccaatcgaaactggaagttttgaacaattccttgtgaattgtgcataatagtgttaaatcattcactatgtccaataacttgatgttttatattttg |
51216493 |
T |
|
| Q |
130 |
agtttttacaagccatgttgctcagatactctggataatttgttacaacttacaatagtacaattagaaatacaagctattttcataccaaatatcttca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216494 |
agtttttacaagccatgttgctcagatactctggataatttgttacaacttacaatagtacaattagaaatacaagctattttcataccaaatatcttca |
51216593 |
T |
|
| Q |
230 |
tatatatttttcctggtaaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaattcgacacacctgagttcaatccttggct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51216594 |
tatatatttttcctggtaaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaatccgacacacctgagttcaatccttggct |
51216693 |
T |
|
| Q |
330 |
agaataatc |
338 |
Q |
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||||||||| |
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| T |
51216694 |
agaataatc |
51216702 |
T |
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