View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0177_low_7 (Length: 309)
Name: NF0177_low_7
Description: NF0177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0177_low_7 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33952746 - 33952524
Alignment:
| Q |
1 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaagattatttgacaggatttatgtagagtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
33952746 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtat |
33952647 |
T |
|
| Q |
101 |
cattcatgtgagatatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33952646 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatg |
33952547 |
T |
|
| Q |
201 |
cctaatttgttgatgatgtccat |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
33952546 |
cctaatttgttgatgatttccat |
33952524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33975352 - 33975124
Alignment:
| Q |
1 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaagattatttgacaggatttatgtagagtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33975352 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtat |
33975253 |
T |
|
| Q |
101 |
cattcatgtgagatatttaacaacttaagtagcctagaagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattc |
194 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
33975252 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattc |
33975153 |
T |
|
| Q |
195 |
atgatgcctaatttgttgatgatgtccat |
223 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
33975152 |
atgatgcctaatttgttgatgatttccat |
33975124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33960052 - 33959824
Alignment:
| Q |
1 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaagattatttgacaggatttatgtagagtat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33960052 |
gttatcgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtat |
33959953 |
T |
|
| Q |
101 |
cattcatgtgagatatttaacaacttaagtagcctagaagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattc |
194 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
33959952 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattc |
33959853 |
T |
|
| Q |
195 |
atgatgcctaatttgttgatgatgtccat |
223 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
33959852 |
atgatgcctaatttgttgatgatttccat |
33959824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33992265 - 33992044
Alignment:
| Q |
1 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaagattatttgacaggatttatgtagagtat |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
33992265 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtat |
33992167 |
T |
|
| Q |
101 |
cattcatgtgagatatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33992166 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatg |
33992067 |
T |
|
| Q |
201 |
cctaatttgttgatgatgtccat |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
33992066 |
cctaatttgttgatgatttccat |
33992044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8278010 - 8278231
Alignment:
| Q |
1 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaagattatttgacaggatttatgtagagtat |
100 |
Q |
| |
|
||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||| |
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| T |
8278010 |
gttattgtccgtgtcactttcactttttcaggtaaatgagcagaggttaattagttacttaaa-gataagaaattatttcacaggatttatgtagagtat |
8278108 |
T |
|
| Q |
101 |
cattcatgtgagatatttaacaacttaagtagcctagaagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatg |
200 |
Q |
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|
||||||||||||||||||||||| || | ||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
8278109 |
cattcatgtgagatatttaacaattttattagccaagaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgagg |
8278208 |
T |
|
| Q |
201 |
cctaatttgttgatgatgtccat |
223 |
Q |
| |
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|||||||| |||||||| ||||| |
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| T |
8278209 |
cctaatttattgatgatttccat |
8278231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 2891573 - 2891615
Alignment:
| Q |
11 |
gtgtcacttgcatttttcctggtaaatgagcagaggttaatta |
53 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
2891573 |
gtgtcacttgcattttttctggtaaatgagcaaagggtaatta |
2891615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 12174 - 12115
Alignment:
| Q |
164 |
gtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
223 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||||||||| ||||| ||||| |
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|
| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccat |
12115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 12284 - 12246
Alignment:
| Q |
14 |
tcacttgcatttttcctggtaaatgagcagaggttaatt |
52 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
12284 |
tcacttgcatttttcctagtatatgagcagaggttaatt |
12246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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