View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0178-INSERTION-4 (Length: 299)
Name: NF0178-INSERTION-4
Description: NF0178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0178-INSERTION-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 22435644 - 22435909
Alignment:
| Q |
27 |
gaatcaaagacagacaatcgactaaaaa-tgacgtagctttctaagcttgcaatc-tccttcggcatattacgattctcaaactttgtagatcttaaatc |
124 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||||||||||||||| | ||||| |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
22435644 |
gaatcaaagacagagaatcgcctaaaaaatgacgtagctttctaagcttgcaaacctcctttggcatattacgattttcaaactctgtagatcttaaatc |
22435743 |
T |
|
| Q |
125 |
taaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaactt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22435744 |
caaagtctctaggttcacgagcatgccaatggattttggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaactt |
22435843 |
T |
|
| Q |
225 |
cccaaatcatgaggaatttcaagttgttttgagctcaaagcaagtaccttcaaccgcctatatttt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22435844 |
cccaaatcatgaggaatttcaagttgttttgagcttaaagcaagtaccttcaaccgcctatatttt |
22435909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 290
Target Start/End: Original strand, 22366961 - 22367202
Alignment:
| Q |
50 |
aaaaatgacgtagctttctaagcttgcaa-tctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcat |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
22366961 |
aaaaatggcgtagctttctaagcttgcaaatctccttcggcatattacgatttttaaactctgtttctcttaaatccaaagtctctaggttcacaagcat |
22367060 |
T |
|
| Q |
149 |
gccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagt |
248 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||| || ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
22367061 |
gccaatggattttggaagttcagaatttctttctccattccccctgaaccaaaaatatttcaagtggttcaaacttcctaaatcatgaggaatttcatgt |
22367160 |
T |
|
| Q |
249 |
tgttttgagctcaaagcaagtaccttcaaccgcctatatttt |
290 |
Q |
| |
|
|| |||||||| |||| ||| |||||||||| |||||||||| |
|
|
| T |
22367161 |
tggtttgagcttaaagtaagcaccttcaaccacctatatttt |
22367202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 22466961 - 22467229
Alignment:
| Q |
27 |
gaatcaaagacagacaatcgactaa-aaatgacgtagctttctaagcttgcaa-tctccttcggcatattacgattctcaaactttgtagatcttaaatc |
124 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| ||||||||||||||||||||| ||||||| ||||||| |||| | ||| | || || |||||||||| |
|
|
| T |
22466961 |
gaatcaaagacatacaatcgcctaataaatggcgtagctttctaagcttgcaaatctcctttggcatatcacgaatttcataattgctatatcttaaatc |
22467060 |
T |
|
| Q |
125 |
taaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaactt |
224 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||||| |||||| |||||||| || ||||||||| || |||| ||| | |||||||||||||||||||| |
|
|
| T |
22467061 |
caaagtctctaagtttgcgatcatgccaatggattttggaagtccagaatatcttcctccaatcatcccgaactcaagatatttcaagtggttcaaactt |
22467160 |
T |
|
| Q |
225 |
cccaaatcatgaggaatttcaagttgtt--ttgagc-tcaaagcaagtaccttcaaccgcctatatttt |
290 |
Q |
| |
|
|||||||||| |||||||||| | || || || |||||||||| ||||||||||||||||||||| |
|
|
| T |
22467161 |
cccaaatcattaggaatttcagctaattccttatgcatcaaagcaagcaccttcaaccgcctatatttt |
22467229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 290
Target Start/End: Original strand, 22357029 - 22357280
Alignment:
| Q |
52 |
aaatgacgtagctttctaagcttgcaa-tctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgc |
150 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22357029 |
aaatggcgtagctttctaagcttgcaaatctccttcggcatattaggatgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgc |
22357128 |
T |
|
| Q |
151 |
caatggatttcggaagtt---------cagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaat |
241 |
Q |
| |
|
|||||||||| |||| || || |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||| |
|
|
| T |
22357129 |
caatggattttggaatttttggaaatataggatatgtttctccaatcacaaagaacccaaaatatttcaagtggttcaaacttcccaaatccttaggaac |
22357228 |
T |
|
| Q |
242 |
ttcaagttgtt-----ttgagctcaaagcaagtaccttcaaccgcctatatttt |
290 |
Q |
| |
|
|||||| ||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
22357229 |
ttcaagccgttcacggtt--gctcaaagcaagcaccttcaaccgcctatatttt |
22357280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 22430230 - 22430402
Alignment:
| Q |
75 |
gcaatctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaat |
174 |
Q |
| |
|
|||| ||||| |||||||||| |||| |||||| || || |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
22430230 |
gcaagctcctgcggcatattatgattttcaaaccttatatatcttaaatccaaagtctctaggttcactagcatgccaatggattttggaagtttagaat |
22430329 |
T |
|
| Q |
175 |
atttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaag |
247 |
Q |
| |
|
|| | |||| ||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
22430330 |
atctacttccattcacctagaacccaaaatatttcaagtggtttaaacttcccaaatcattaggaatttcaag |
22430402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 22629480 - 22629676
Alignment:
| Q |
50 |
aaaaatgacgtagctttctaagcttgcaa-tctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcat |
148 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||| |||||||||||||| ||| | || || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
22629480 |
aaaaatggcgtagctttctaagcatgcaaatctcctttggcatattacgattttcagtcattctatgtcttaaatccaaagtctctaggttcacgagcat |
22629579 |
T |
|
| Q |
149 |
gccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttca |
245 |
Q |
| |
|
|||||||||||| |||| | || ||| | || ||||||||| | |||| ||||| ||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
22629580 |
gccaatggattttggaattccaaaatctcttcctccaatcatcaggaactcaaaatatttcaagtggttcaaacttccctaatcattaggaatttca |
22629676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 22441782 - 22441976
Alignment:
| Q |
50 |
aaaaatgacgtagctttctaagcttgcaa-tctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcat |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||| | |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
22441782 |
aaaaatggcgtagctttctaagcttgcaaatctccttcggcatattatcatttacaaaatatgtatctcttaaatccaaagtctctaggttcacgagcat |
22441881 |
T |
|
| Q |
149 |
gccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagt |
248 |
Q |
| |
|
|||||||||||| ||||||||| || |||| || || | | ||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
22441882 |
gccaatggattttggaagttcaaaacatttacct------acatttatcccaaaatatttcaagtgcttcaaacttcccaaatcaataggaatttcaagt |
22441975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 290
Target Start/End: Original strand, 22352915 - 22353093
Alignment:
| Q |
116 |
tcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttca---gaatatttttctccaatcaccctgaacccaaaaaatttcaag |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||| || ||||||||| || |||| | || ||||||| |
|
|
| T |
22352915 |
tcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagtccagttgaatatcttcctccaatcatccagaactc--aatatttcaaa |
22353012 |
T |
|
| Q |
213 |
tggttcaaacttcccaaatcatgaggaatttcaagttgtt--ttgagc-tcaaagcaagtaccttcaaccgcctatatttt |
290 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| | | || || || |||||||||| ||||||||||||||||||||| |
|
|
| T |
22353013 |
tggttcaaatttcccaaatcattaggaatttctattaattccttatgcatcaaagcaagcaccttcaaccgcctatatttt |
22353093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 37929959 - 37930094
Alignment:
| Q |
112 |
tagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaa |
211 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| | || || | ||||| |||| || || ||||||| |
|
|
| T |
37929959 |
tagattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagtccagaacttcttactttattcaccacgaacgcataatatttcaa |
37930058 |
T |
|
| Q |
212 |
gtggttcaaacttcccaaatcatgaggaatttcaag |
247 |
Q |
| |
|
|| ||||||||||| ||||| | | |||||||||| |
|
|
| T |
37930059 |
ttgtttcaaacttccaaaatctttaagaatttcaag |
37930094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 22634602 - 22634661
Alignment:
| Q |
108 |
tttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagt |
167 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22634602 |
tttggagattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagt |
22634661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 37929800 - 37929837
Alignment:
| Q |
57 |
acgtagctttctaagcttgc-aatctccttcggcatat |
93 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37929800 |
acgtagctttctaagcttgcaaatctccttcggcatat |
37929837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 29604522 - 29604580
Alignment:
| Q |
109 |
ttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagt |
167 |
Q |
| |
|
||||| || ||||||| || |||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
29604522 |
ttgtatatgttaaatccaaggtctctaggttctcgagcatgcaaatggatttcagaagt |
29604580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 845 times since January 2019
Visitors: 1512