View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0178-INSERTION-5 (Length: 711)

Name: NF0178-INSERTION-5
Description: NF0178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0178-INSERTION-5
NF0178-INSERTION-5
[»] chr5 (1 HSPs)
chr5 (7-711)||(17883865-17884564)


Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 7 - 711
Target Start/End: Complemental strand, 17884564 - 17883865
Alignment:
Q  7 agcactagtgtttaattctttaaaattgagagctaaagttactttttattggttattgtgtttgttgtgatggnnnnnnnnnnnnnnngattaaatctac 106  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||               ||||||||||||    
T  17884564 agcactagtgtttaattctttaaaagtgagagctaaagttgctttttattggttattgtgtttgttgtgatggttttttttcctttttgattaaatctac 17884465  T
Q  107 aacttttcttgttttggagattaaatagtaagcattatcatgtacctgaatgttctccttttgagaccagttttgctgcttcatttttgagttgtatcat 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  17884464 aacttttcttgttttggagattaaacagtaagcattatcatgtacctgaatgttctccttttgagaccagttttgctgcttcatttttgagtt----cat 17884369  T
Q  207 tacatttgttaagtcagtttgacattatgttcatgtgatttagttagacacttgagattaaaagcatgtctggtgtgccgtactagttagcgtcaaacac 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17884368 tacatttgttaagtcagtttgacattatgtttatgtgatttagttagacacttgatattaaaagcatgtctggtgtgccgtactagttagcgtcaaacac 17884269  T
Q  307 atcaaatgaaaatgacatgtagttacattcaatttattccattttcaaattatttcaatgcttgtgcctacattagtgcttcctagtttatgtttcctat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17884268 atcaaatgaaaatgacatgtagttacattcaatttattccattttcaaactatttcaatgtttgtgcctacattagtgcttcctagtttatgtttcctat 17884169  T
Q  407 atacctaataagaaaatacataaaagtttacactttgcaatcatcatatgcgatttcaatttcatacttatgtttttatcaaagctattgcttgggcgat 506  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17884168 atacctaataagaaaatacataaaattttacactttgcaatcatcatatgcgatttcaatttcatacttatg-ttttatcaaagctattgcttgggcgat 17884070  T
Q  507 gtttaccttaattttattaccttcactatttcactctattcttcttgtgcttgttattgttgttgttgttacagtattgatggcagtgatagagttttta 606  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17884069 gtttaccttaattttattagcttcactatttcactctattcttcttgtgtttgttattgttgttgttgttacagtattgatggcagtgatagagttttta 17883970  T
Q  607 aagaactaaagcgggctgacgttgttgttctcacttatgcatgtgatcggccttatacacttacaagtctaactatattttggctccctcttcttcgcaa 706  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17883969 aagaactaaagcgggctgacattgttgttctcacttatgcatgtgatcggccttatacacttacaagtttaactatattttggctccctcttcttcgcaa 17883870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 839 times since January 2019
Visitors: 1512