View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0178-INSERTION-6 (Length: 724)

Name: NF0178-INSERTION-6
Description: NF0178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0178-INSERTION-6
NF0178-INSERTION-6
[»] chr4 (6 HSPs)
chr4 (313-715)||(36086849-36087238)
chr4 (502-621)||(5213284-5213403)
chr4 (496-557)||(4441594-4441655)
chr4 (502-560)||(2388912-2388970)
chr4 (502-562)||(9607827-9607887)
chr4 (646-715)||(5213205-5213276)
[»] chr2 (8 HSPs)
chr2 (8-181)||(203293-203465)
chr2 (496-686)||(35349724-35349913)
chr2 (234-292)||(203517-203575)
chr2 (234-284)||(202853-202903)
chr2 (113-179)||(202957-203023)
chr2 (537-697)||(19879835-19879995)
chr2 (502-558)||(27516087-27516143)
chr2 (502-554)||(43674343-43674395)
[»] chr1 (6 HSPs)
chr1 (502-627)||(9924046-9924171)
chr1 (502-552)||(10006354-10006404)
chr1 (504-553)||(925657-925706)
chr1 (503-552)||(41095358-41095407)
chr1 (245-313)||(50674152-50674220)
chr1 (583-713)||(9995319-9995449)
[»] chr5 (3 HSPs)
chr5 (502-705)||(16787446-16787650)
chr5 (502-556)||(28751998-28752052)
chr5 (512-558)||(38275749-38275795)
[»] chr8 (3 HSPs)
chr8 (237-314)||(32327039-32327116)
chr8 (504-563)||(29239379-29239438)
chr8 (509-555)||(33376647-33376693)
[»] chr3 (2 HSPs)
chr3 (496-567)||(4609220-4609291)
chr3 (481-558)||(13655646-13655723)
[»] chr6 (4 HSPs)
chr6 (502-553)||(8491579-8491630)
chr6 (234-314)||(22681487-22681559)
chr6 (630-697)||(8491444-8491512)
chr6 (502-555)||(1113356-1113409)
[»] scaffold0755 (2 HSPs)
scaffold0755 (234-284)||(4399-4449)
scaffold0755 (108-158)||(4566-4616)
[»] chr7 (2 HSPs)
chr7 (245-313)||(48577826-48577894)
chr7 (506-556)||(26131425-26131475)
[»] scaffold0072 (1 HSPs)
scaffold0072 (234-284)||(48441-48491)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 313 - 715
Target Start/End: Complemental strand, 36087238 - 36086849
Alignment:
Q  313 caacttatagttgtctattactataagtggtgttagannnnnnnncaatttcttttaaaatgaaaaatatatcaacattataacgggacctctaatctat 412  Q
    |||||||||||||||| |||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36087238 caacttatagttgtctgttactataagtggtgttacattatttttcaatttcttttaaaatgaaaaatatatcaacattataacgggacctctaatctat 36087139  T
Q  413 atttactcgttgaacaaggttggaggctgatgaaccaacctccatgtcttgtttctcatatgttcaaacactacaagattttgtcgatcttcctgcggat 512  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||            ||     
T  36087138 atttactcgtcgaacaaggttggaggctgatgaaccaacctccatgtcttgtttctcatatgctcaaacacaacaagtttttgtc------------gac 36087051  T
Q  513 tttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaaccagataccgcaggaaaatc 612  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||| | ||||||||||||||  |||||||||||||||||||    
T  36087050 tttcctgcggaaattaatccacaggaatgcctgaggattttgttgcgaataacgtttg-catacaaaatgtcctgcgaattcagataccgcaggaaaatc 36086952  T
Q  613 tgcgggtaaattttaaatttgctggggattttcctgccgaaccgttgacgaatattttttgaacgtttcctta-gaaattccgca-gtattgctgtggtt 710  Q
    ||||||||| |||  ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||    
T  36086951 tgcgggtaacttt--aatttgctgaggattttcctgccgaaccgttgacgaatattatttgaacgtttccttaggaaattccgcaggtattgctggggtt 36086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 5213403 - 5213284
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaaccagatacc 601  Q
    ||||||||| ||||||||||| ||  ||||| ||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||| |||||||||    
T  5213403 ttcctgcggcttttcatgcggtaacaaatccgcaggaatacctgaggattttgctgcggataacgttagtcatatcaaatttcctgcgaatccagatacc 5213304  T
Q  602 gcaggaaaatctgcgggtaa 621  Q
    |||||||||||||| |||||    
T  5213303 gcaggaaaatctgcaggtaa 5213284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 4441655 - 4441594
Alignment:
Q  496 tcgatcttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctg 557  Q
    ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  4441655 tcgattttcctgcggatttacatgcggaaattattccgcaggaatacctgaggattttgctg 4441594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 2388970 - 2388912
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcgg 560  Q
    ||||||||||||| |||| | ||| |||||| |||||||||||||||||||||||||||    
T  2388970 ttcctgcggatttgcatgggcaaaataatccgcaggaatacctgaggattttgctgcgg 2388912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 9607887 - 9607827
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggat 562  Q
    ||||| |||||||||||| ||||| |||||| |||||||  |||||||||||| |||||||    
T  9607887 ttcctacggattttcatgaggaaaataatccgcaggaatttctgaggattttgttgcggat 9607827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 5213276 - 5213205
Alignment:
Q  646 ctgccgaaccgttgacgaatattttttgaacgtttcctta-gaaattccgca-gtattgctgtggtttttac 715  Q
    |||| ||||| |||||||||||| |||||||||||||||| |||||||| || ||||||||| || ||||||    
T  5213276 ctgcagaaccattgacgaatattatttgaacgtttccttaggaaattccacaggtattgctgcggattttac 5213205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 203293 - 203465
Alignment:
Q  8 atagcagaatcgaaaaaaccagcacaggtaaagagaggttgccaaattgatttgaaaacaaaattcactgcatatgcacatttttacttgaaagggggga 107  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  203293 atagcagaaccgaaaaaaccagcacaggaaaagagaggttgccaaattgatttgaaaacaaaattcattgcatatgcacatttttacttgaaa-ggggga 203391  T
Q  108 agaaaacgagtggtggtgccgatggggttgaagaaaaccggcgaaggggaaagactgtgtttgagtgcatcacg 181  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  203392 agaaaacgagtggtggtgccgatggggttgaagaaaattggcgaaggggaaagactgtgtttgagtgcatcacg 203465  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 496 - 686
Target Start/End: Complemental strand, 35349913 - 35349724
Alignment:
Q  496 tcgatcttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaacca 595  Q
    ||||| ||||| || ||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||| ||||| | || | ||||||||| ||     
T  35349913 tcgattttcctacgtatttttatgcggaaaacaatccacaggaatacctgaggattttgctgcggataatgttagtcatacgaagtatcctgcgaatccg 35349814  T
Q  596 gataccgcaggaaaatctgcgggtaaattttaaatttgctggggattttcctgccgaaccgttgacgaatattttttgaacgtttccttag 686  Q
    ||| || |||||||||| || ||| || |||||| |||||| |||||||||||| ||||  |||| ||||||| |||| ||||||||||||    
T  35349813 gatcccacaggaaaatccgcaggt-aactttaaaattgctgaggattttcctgcggaactattgaggaatattatttggacgtttccttag 35349724  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 203517 - 203575
Alignment:
Q  234 attagcattgccacgtgtcaaaatctgattgggttaatggcacaatggcaccatggcac 292  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  203517 attagcattgccacgtgtcaaaatctgattggggtaatggcaccatggcactatggcac 203575  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 202903 - 202853
Alignment:
Q  234 attagcattgccacgtgtcaaaatctgattgggttaatggcacaatggcac 284  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  202903 attagcattgccacgtgtcaaaatttgattggggtaatggcacaatggcac 202853  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 203023 - 202957
Alignment:
Q  113 acgagtggtggtgccgatggggttgaagaaaaccggcgaaggggaaagactgtgtttgagtgcatca 179  Q
    ||||||||||||||  |||||||||||||||||| | |||||||  |||||||||||| ||||||||    
T  203023 acgagtggtggtgcttatggggttgaagaaaaccagagaaggggggagactgtgtttgtgtgcatca 202957  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 697
Target Start/End: Original strand, 19879835 - 19879995
Alignment:
Q  537 gaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaaccagataccgcaggaaaatctgcgggtaaattttaaatttgctg 636  Q
    |||||||||||||||||||||||||||||| | ||| | | || | ||||||||| ||| |  |||| | |||||| || ||||| |||| | || ||||    
T  19879835 gaatacctgaggattttgctgcggataacgatagtcttacgaagtttcctgcgaatccataggccgctgcaaaatccgcaggtaactttt-acttagctg 19879933  T
Q  637 gggattttcctgccgaaccgttgacgaatattttttgaacgtttcctta-gaaattccgcag 697  Q
     |||||||||| |  |||  |||| ||||||| ||| || ||||||||| ||||||||||||    
T  19879934 aggattttccttcgaaactattgaggaatattattttaatgtttccttaggaaattccgcag 19879995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 558
Target Start/End: Complemental strand, 27516143 - 27516087
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgc 558  Q
    ||||||||||||||| || ||||||| |||| ||||||||| |||||||||| ||||    
T  27516143 ttcctgcggattttcctgaggaaatttatccgcaggaatacttgaggattttcctgc 27516087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 43674343 - 43674395
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttg 554  Q
    ||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||    
T  43674343 ttcctacggattttcatgcgaaaaataacccacaggaataccagaggattttg 43674395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 502 - 627
Target Start/End: Complemental strand, 9924171 - 9924046
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaaccagatacc 601  Q
    ||||||||||||| |||||||||  || ||| |||||||||||||||||||||||||||||||| || ||||| |||| | ||||||||| || ||| ||    
T  9924171 ttcctgcggatttacatgcggaagatagtccgcaggaatacctgaggattttgctgcggataacattagtcataccaagtttcctgcgaatccggattcc 9924072  T
Q  602 gcaggaaaatctgcgggtaaatttta 627  Q
    ||||||| ||| |||||||| |||||    
T  9924071 gcaggaacatccgcgggtaactttta 9924046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 10006404 - 10006354
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattt 552  Q
    |||||| ||||||||||||||||| ||||||  ||||||||||||||||||    
T  10006404 ttcctgtggattttcatgcggaaaataatccgtaggaatacctgaggattt 10006354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 553
Target Start/End: Complemental strand, 925706 - 925657
Alignment:
Q  504 cctgcggattttcatgcggaaattaatccacaggaatacctgaggatttt 553  Q
    |||||||||||||  |||||||||||||| || |||||||||||||||||    
T  925706 cctgcggattttccggcggaaattaatccgcatgaatacctgaggatttt 925657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 41095407 - 41095358
Alignment:
Q  503 tcctgcggattttcatgcggaaattaatccacaggaatacctgaggattt 552  Q
    ||||||||||||||||||| |||| ||||||||||||||| || ||||||    
T  41095407 tcctgcggattttcatgcgcaaataaatccacaggaatacttggggattt 41095358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 50674152 - 50674220
Alignment:
Q  245 cacgtgtcaaaatctgattgggttaatggcacaatggcaccatggcactatggtactgaagtgcttccc 313  Q
    |||||||||||||||||||||    ||||||||||||||||||    |||||| |||||||||||||||    
T  50674152 cacgtgtcaaaatctgattggtcctatggcacaatggcaccatattgctatggcactgaagtgcttccc 50674220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 713
Target Start/End: Complemental strand, 9995449 - 9995319
Alignment:
Q  583 tcctgcgaaaccagataccgcaggaaaatctgcgggtaaattttaaatttgctggggattttcctgccgaaccgttgacgaatattttttgaacgtttcc 682  Q
    ||||||||| |||||| ||||||||||||| || ||||  |||| | ||||||| |||||||||||| ||||   || |||||| | |||  ||||||||    
T  9995449 tcctgcgaatccagatcccgcaggaaaatccgcaggtatctttt-attttgctgaggattttcctgcggaactaatgtcgaataatattttgacgtttcc 9995351  T
Q  683 tta-gaaattccgcagtattgctgtggttttt 713  Q
    ||| | |||||||||| ||||| | |||||||    
T  9995350 ttaggtaattccgcaggattgcagcggttttt 9995319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 502 - 705
Target Start/End: Complemental strand, 16787650 - 16787446
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgtttgtcatgccaaatgtcctgcgaaaccagatacc 601  Q
    |||||||||||||||||| ||||| || ||| ||||| ||| ||||||||||||| ||| | | ||||||||| | |  | ||||||||| |||||  ||    
T  16787650 ttcctgcggattttcatgaggaaaatattccgcaggattacttgaggattttgctccgggttatgtttgtcatacgaggtttcctgcgaatccagaagcc 16787551  T
Q  602 gcaggaaaatctgcgggtaaattttaaatttgctggggattttcctgccgaaccgttgacgaatattttttgaacgtttcctta-gaaattccgca-gta 699  Q
    ||||||| ||| || |||| | ||| ||||||||| |||||||||||| ||||  ||||||| |||| ||| ||| |||||||| ||||||||||| |||    
T  16787550 gcaggaacatccgcaggtacacttt-aatttgctgaggattttcctgcggaactattgacgattattatttcaacatttccttaggaaattccgcacgta 16787452  T
Q  700 ttgctg 705  Q
    ||||||    
T  16787451 ttgctg 16787446  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 556
Target Start/End: Original strand, 28751998 - 28752052
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgct 556  Q
    ||||||| ||||||||||  |||| ||||||||| ||||| ||||||||||||||    
T  28751998 ttcctgcagattttcatgtagaaaataatccacaagaatatctgaggattttgct 28752052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 558
Target Start/End: Complemental strand, 38275795 - 38275749
Alignment:
Q  512 ttttcatgcggaaattaatccacaggaatacctgaggattttgctgc 558  Q
    ||||| ||||||||||| ||||||||||| |||||| ||||||||||    
T  38275795 ttttcctgcggaaattattccacaggaattcctgagtattttgctgc 38275749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 32327116 - 32327039
Alignment:
Q  237 agcattgccacgtgtcaaaatctgattgggttaatggcacaatggcaccatggcactatggtactgaagtgcttccca 314  Q
    ||||||||||||||||||||| ||||||||  ||||||| |||||||||||| |||||||| ||||||||||||||||    
T  32327116 agcattgccacgtgtcaaaatatgattggggcaatggcaaaatggcaccatgacactatggcactgaagtgcttccca 32327039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 29239379 - 29239438
Alignment:
Q  504 cctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggata 563  Q
    ||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||| ||||    
T  29239379 cctgcggattttcatgcggaaaacaatccgcagcaatacctgaggattttgctgctgata 29239438  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 33376647 - 33376693
Alignment:
Q  509 ggattttcatgcggaaattaatccacaggaatacctgaggattttgc 555  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||    
T  33376647 ggattttcatgtggaaactaatccgcaggaatagctgaggattttgc 33376693  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 496 - 567
Target Start/End: Complemental strand, 4609291 - 4609220
Alignment:
Q  496 tcgatcttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgcggataacgt 567  Q
    ||||| ||||||| |||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  4609291 tcgattttcctgcagatttttatgcgaaaattaatccgcaggaatagctgaggattttgctgcggataacgt 4609220  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 558
Target Start/End: Complemental strand, 13655723 - 13655646
Alignment:
Q  481 cactacaagattttgtcgatcttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgctgc 558  Q
    |||||| ||| ||| ||| | |||||||||||||||||||||||| |||||  |||||||| ||  ||||||||||||    
T  13655723 cactactagaatttctcgtttttcctgcggattttcatgcggaaaataatcagcaggaatatcttgggattttgctgc 13655646  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 8491630 - 8491579
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggatttt 553  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  8491630 ttcctgcggatgttcatgcggaaaataatccacaggaatacctgaggatttt 8491579  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 22681487 - 22681559
Alignment:
Q  234 attagcattgccacgtgtcaaaatctgattgggttaatggcacaatggcaccatggcactatggtactgaagtgcttccca 314  Q
    |||||||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||||||||||||||    
T  22681487 attagcattgccacgtgtcaaaatctgatttggg--------caatggcaccatggcactatggcactgaagtgcttccca 22681559  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 697
Target Start/End: Complemental strand, 8491512 - 8491444
Alignment:
Q  630 tttgctggggattttcctgccgaaccgttgacgaatattttttgaacgtttccttag-aaattccgcag 697  Q
    ||||||| |||||||| ||| |||  |||| |||||||||||| ||||||||||||| |||||||||||    
T  8491512 tttgctgaggattttcttgcggaattgttgtcgaatattttttcaacgtttccttagaaaattccgcag 8491444  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 555
Target Start/End: Complemental strand, 1113409 - 1113356
Alignment:
Q  502 ttcctgcggattttcatgcggaaattaatccacaggaatacctgaggattttgc 555  Q
    ||||||||||| ||   ||||||| |||||| ||||||||||||||||||||||    
T  1113409 ttcctgcggatgtttgagcggaaaataatccgcaggaatacctgaggattttgc 1113356  T

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Target: scaffold0755 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 4449 - 4399
Alignment:
Q  234 attagcattgccacgtgtcaaaatctgattgggttaatggcacaatggcac 284  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  4449 attagcattgccacgtgtcaaaatctgattggggcaatggcaccatggcac 4399  T

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Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 4616 - 4566
Alignment:
Q  108 agaaaacgagtggtggtgccgatggggttgaagaaaaccggcgaaggggaa 158  Q
    ||||||| ||||| ||||||  ||||||||||||||||| |||||||||||    
T  4616 agaaaaccagtggaggtgcctttggggttgaagaaaacctgcgaaggggaa 4566  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 48577826 - 48577894
Alignment:
Q  245 cacgtgtcaaaatctgattgggttaatggcacaatggcaccatggcactatggtactgaagtgcttccc 313  Q
    |||||||||||||||||||||  | || |||||||||||||||   ||||||| |||||||||||||||    
T  48577826 cacgtgtcaaaatctgattggtcttatcgcacaatggcaccatattactatggcactgaagtgcttccc 48577894  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 26131475 - 26131425
Alignment:
Q  506 tgcggattttcatgcggaaattaatccacaggaatacctgaggattttgct 556  Q
    |||||| |||||| || || ||||||| |||||||||||||||||||||||    
T  26131475 tgcggagtttcatacgcaatttaatccgcaggaatacctgaggattttgct 26131425  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 48491 - 48441
Alignment:
Q  234 attagcattgccacgtgtcaaaatctgattgggttaatggcacaatggcac 284  Q
    |||||||||||||||||||||||||||||| ||  |||||||| |||||||    
T  48491 attagcattgccacgtgtcaaaatctgattagggcaatggcaccatggcac 48441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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