View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0178_high_3 (Length: 284)
Name: NF0178_high_3
Description: NF0178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0178_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 51753592 - 51753833
Alignment:
| Q |
30 |
caattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgtt |
129 |
Q |
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| T |
51753592 |
caattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgtt |
51753691 |
T |
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| Q |
130 |
gttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753692 |
gttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattc |
51753791 |
T |
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| Q |
230 |
tggctcccaacctcaatttcccttttactgtatctgttatct |
271 |
Q |
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| T |
51753792 |
tggctcccaacctcaatttcccttttactgtatctgttatct |
51753833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 51766375 - 51766496
Alignment:
| Q |
46 |
gaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacact |
145 |
Q |
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| T |
51766375 |
gaagaaattttgatggatttgtcactacagaaagcaattttgtgagtggaaatgaagaggaggccagctataagacctgatgtggttgataggtaacact |
51766474 |
T |
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| Q |
146 |
gtgatgctttcaacagcttctc |
167 |
Q |
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| T |
51766475 |
gagatgctttcaacagcttctc |
51766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 12196115 - 12196347
Alignment:
| Q |
37 |
ccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgata |
136 |
Q |
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| T |
12196115 |
ccttttggagaagagattttaattgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgata |
12196214 |
T |
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| Q |
137 |
agtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattctggctcc |
236 |
Q |
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||||| || |||||||| | ||| ||||||||||||| |||||||| |||| ||| ||||| ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
12196215 |
gataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatgaacaccttttccactcctccaacttgaagaattctagctcc |
12196314 |
T |
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| Q |
237 |
caacctcaatttcccttttactgtatctgttat |
269 |
Q |
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| T |
12196315 |
taagctcagctttcctttcactgtatcggttat |
12196347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 42395381 - 42395489
Alignment:
| Q |
67 |
tcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttct |
166 |
Q |
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||||||||||| |||||||| || ||||| ||||| || | || || |||||||| | |||||| |||||||||| ||||| || ||||||| |||| |
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| T |
42395381 |
tcactacaaaatgcaactttttgggtggagatgaaaagaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttct |
42395480 |
T |
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| Q |
167 |
ctccatctt |
175 |
Q |
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|||| |||| |
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|
| T |
42395481 |
ctccttctt |
42395489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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