View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0178_low_1 (Length: 490)
Name: NF0178_low_1
Description: NF0178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0178_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 97 - 463
Target Start/End: Complemental strand, 27085010 - 27084639
Alignment:
| Q |
97 |
aatctcatctccaaccgccgtttgcactctcttcttctgctttcaacataaaca----ttcagaagtttgagatatctattactccaacaaatcgaaagg |
192 |
Q |
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| T |
27085010 |
aatctcatctccaaccgccgtttgcactctcttcttctgctttcaacataaacaaacattcagaagtttgagatatctattcctccaacaaatcgaaagg |
27084911 |
T |
|
| Q |
193 |
ttagtcttcatgttcccgaagatattgtttctctatttttaagactacctttgaaatccgtgaataggtttacatgtgtatgcaaatcttggtctacttt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
27084910 |
ttagtcttcatgttcccgaagatattgtttctctatttttaagactacctttgaaatccgtgaataggtttacatgtttatgcaaatcttggactacttt |
27084811 |
T |
|
| Q |
293 |
atgcaaatcttgaatagagttaaaaacatggagggagaaaatttgatgacacattgacactgataccattattgctcctcataacttgtaatcaaaacga |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
27084810 |
atgcaaatcttgaatagagttaaaaacatggagggagaaaatttgatgacacattgacacttataccattattgctcctcataacttctaatcaaaacga |
27084711 |
T |
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| Q |
393 |
acataaaaataaatgtatgaatagtgataattgaa-aaaatgtttcatctttcggacttatttcctttgaca |
463 |
Q |
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| T |
27084710 |
acataaaaataaatgtatgaatagtgataattgaaaaaaatgtttcatctttcggacttatttcctttgaca |
27084639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 96 - 294
Target Start/End: Complemental strand, 27718000 - 27717808
Alignment:
| Q |
96 |
caatctcatctccaaccgccgtttgcactctcttcttctgctttcaacataaacattcagaagtttgagatatctattactccaacaaatcgaaaggtta |
195 |
Q |
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| T |
27718000 |
caatctaatctccaaccgccatttgcactttcttcctttgctttcaacataaacattcac--------gtta-ctatggctccaacaaatcaaaaggtta |
27717910 |
T |
|
| Q |
196 |
gtcttcatgttcccgaagatattgt-ttctctattttt--aagactacctttgaaatccgtgaataggtttacatgtgtatgcaaatcttggtctacttt |
292 |
Q |
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|||||||||||||||||||| | || |||||||| ||| || ||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
27717909 |
gtcttcatgttcccgaagatgtcgtcttctctatattttcaaaactacctctgaaatccgtgaatcggtttacatgtgtatccaaatcttggactacttt |
27717810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 27725299 - 27725152
Alignment:
| Q |
150 |
attcagaagtttgagatatctattactccaacaaatcgaaaggttagtcttcatgttcccgaagatattgt-ttctctattttt--aagactacctttga |
246 |
Q |
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| T |
27725299 |
attcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttga |
27725200 |
T |
|
| Q |
247 |
aatccgtgaataggtttacatgtgtatgcaaatcttggtctactttat |
294 |
Q |
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| T |
27725199 |
aatctgcgaataggtttacttgtttaggcaaatcttggtctactttat |
27725152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 27736519 - 27736400
Alignment:
| Q |
178 |
caacaaatcgaaaggttagtcttcatgttcccgaagatattgt-ttctctattttt--aagactacctttgaaatccgtgaataggtttacatgtgtatg |
274 |
Q |
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||||||| | |||||||||| |||||||| || ||||| || || ||||||||| || ||||||||||||||| |||||||||||||| ||| || | |
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| T |
27736519 |
caacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttttctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttagg |
27736420 |
T |
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| Q |
275 |
caaatcttggtctactttat |
294 |
Q |
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|||||||||||||||||||| |
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| T |
27736419 |
caaatcttggtctactttat |
27736400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 19220707 - 19220751
Alignment:
| Q |
236 |
actacctttgaaatccgtgaataggtttacatgtgtatgcaaatc |
280 |
Q |
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| T |
19220707 |
actacctttgaaatctgtaaatcggtttacttgtgtatgcaaatc |
19220751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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