View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_high_1 (Length: 331)
Name: NF0179_high_1
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 45568129 - 45568424
Alignment:
| Q |
30 |
gcaagtatcggtgcaagcaattaccctataaatgtacaaaaaacaaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctaga |
129 |
Q |
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| T |
45568129 |
gcaagtatcggtgcaagcaattactctataaatgtacaaaaaactaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctaga |
45568228 |
T |
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| Q |
130 |
tcatatggtgcagtagcttattcaatgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45568229 |
tcatatggtgcagtagcttattcaatgaatcccctgacaatcctctggatgctactaagctatgaacatcatgaatctcattgtaaccagtgtaattagc |
45568328 |
T |
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| Q |
230 |
aattcctaactgctcatactaaaacaaatgataacaatatgttaaaaactgta-ttgtgctacaaatgacagcataatgaactcccagcctatgat |
324 |
Q |
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| T |
45568329 |
aattcctacctgctcatactaaaacaaatgataacaatatgttaaaaactgtatttgtgctacaaatgacaacataatgaactcccagcccatgat |
45568424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 70 - 315
Target Start/End: Original strand, 45093489 - 45093733
Alignment:
| Q |
70 |
aaacaaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaa |
169 |
Q |
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| T |
45093489 |
aaactaattaaaactaaatgaagggtatctaacaatcctttgccttcgtgtccttcaagatcatatggtgcggtaactta---aatgaatcccatgacaa |
45093585 |
T |
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| Q |
170 |
tcctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagcaattcctaactgctcatactaaaacaaatgataacaatat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
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| T |
45093586 |
tcctctggatgctactaagctatgaacatcatgaatcacatgatagccagtgtaattagcaattccaacctgctcatactaaaacaaatggtaacaatac |
45093685 |
T |
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| Q |
270 |
gttaaaaac--tgtattgtgctacaaatgacagcataatgaactccca |
315 |
Q |
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||||||||| | ||| |||||||||||||| |||||||||||||| |
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| T |
45093686 |
gttaaaaacaatacattttgctacaaatgacaaaataatgaactccca |
45093733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 70 - 248
Target Start/End: Complemental strand, 35816864 - 35816686
Alignment:
| Q |
70 |
aaacaaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaa |
169 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| |
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| T |
35816864 |
aaactaattaaaactaaattaagggtatctaacaatcctctgctttcatgtccttcaagattatacggtgcagtagcttattcaatgaatcccccgacaa |
35816765 |
T |
|
| Q |
170 |
tcctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagcaattcctaactgctcatac |
248 |
Q |
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| T |
35816764 |
tcctctggatgctactaagctatgaacatcatgaatctcaccatagccagtgtaattagcaattccaacctgctcatac |
35816686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 70 - 312
Target Start/End: Complemental strand, 45177357 - 45177114
Alignment:
| Q |
70 |
aaacaaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaa |
169 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |||| ||||||| | ||||||| ||||| |||||||||||||| |
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| T |
45177357 |
aaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaa |
45177258 |
T |
|
| Q |
170 |
tcctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagcaattcctaactgctcatactaaaacaaatgataacaatat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| | ||||||| | | ||||||| ||| | |||| |
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| T |
45177257 |
tcctctggatgctactaagctatgaacatcatgaatctcatcatagcaagtgttattagcaattccaacctgctca-aattaaacaaaggattataatac |
45177159 |
T |
|
| Q |
270 |
gttaaaaac--tgtattgtgctacaaatgacagcataatgaactc |
312 |
Q |
| |
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|||||| || ||||||||| |||| |||||| ||||||||||| |
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| T |
45177158 |
gttaaagactatgtattgtgttacacatgacaaaataatgaactc |
45177114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 104 - 263
Target Start/End: Original strand, 45102728 - 45102887
Alignment:
| Q |
104 |
atcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaatcctctggatgctactaagctatgaacatcatga |
203 |
Q |
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|||||||| ||||||| ||||| | | |||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
45102728 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcctgtggatgatactaagctatgaacatcatga |
45102827 |
T |
|
| Q |
204 |
atctcattgtagccagtgtaattagcaattcctaactgctcatactaaaacaaatgataa |
263 |
Q |
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| T |
45102828 |
aactcatcatagccagtgttattagcaactccaacctgctcaaactaaaacaaataataa |
45102887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 44666546 - 44666691
Alignment:
| Q |
171 |
cctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagcaattcctaactgctcatactaaaacaaatgataacaatatg |
270 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| |||| |||| |||||||||| | ||||||| |||||||| ||||||| |||| | |
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| T |
44666546 |
cctctagatgctactaagctatgaacatcaagaatctcatcatagcaggtgttattagcaattgcagcctgctcaaactaaaacggatgataataatacg |
44666645 |
T |
|
| Q |
271 |
ttaaaaac--tgtattgtgctacaaatgacagcataatgaactccc |
314 |
Q |
| |
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|||||||| | |||||||||||| ||||| |||||||||||| |
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| T |
44666646 |
ttaaaaactatatattgtgctacacttgacaaactaatgaactccc |
44666691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 44685870 - 44686015
Alignment:
| Q |
171 |
cctctggatgctactaagctatgaacatcatgaatctcattgtagccagtgtaattagcaattcctaactgctcatactaaaacaaatgataacaatatg |
270 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||| |||| |||| |||||||||| | ||||||| |||||||| ||||||| |||| | |
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| T |
44685870 |
cctctagatgctactaagctatgaacatcaagaatctcatcatagcaggtgttattagcaattgcagcctgctcaaactaaaacggatgataataatacg |
44685969 |
T |
|
| Q |
271 |
ttaaaaac--tgtattgtgctacaaatgacagcataatgaactccc |
314 |
Q |
| |
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|||||||| | |||||||||||| ||||| |||||||||||| |
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| T |
44685970 |
ttaaaaactatatattgtgctacacttgacaaactaatgaactccc |
44686015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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