View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_high_2 (Length: 316)
Name: NF0179_high_2
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 3111798 - 3112003
Alignment:
| Q |
83 |
cttaccatgtaccttacttctcaaaaaccttctacccttccttttccttgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
182 |
Q |
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| T |
3111798 |
cttaccatgtaccttacttctcaaaaaccttctactcttccttttccttgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
3111897 |
T |
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| Q |
183 |
ttattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
282 |
Q |
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| T |
3111898 |
ttattcacaccaactttttcattatcaacaaataaagaacttttttgcacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
3111997 |
T |
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| Q |
283 |
gttctt |
288 |
Q |
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|||||| |
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| T |
3111998 |
gttctt |
3112003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26269349 - 26269222
Alignment:
| Q |
1 |
caaatggaccaacaagaggaatttctaactccttttcctctatattaccaaaatttccatcaaatttcaattttcttttatgcttaccatgtaccttact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
26269349 |
caaatggaccaacaagaggaatttctaactccttttcctctatattaccaaaatttccatcaactttcaattttcttttatgcttaccatgtaacttact |
26269250 |
T |
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| Q |
101 |
tctcaaaaaccttctacccttccttttc |
128 |
Q |
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| T |
26269249 |
tctcaatgatcttctactcctccttttc |
26269222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 26269227 - 26269092
Alignment:
| Q |
153 |
cttttcttggccaatacaacatctacgagattattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttt |
252 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
26269227 |
cttttcttggccaatacaatatccaggagattattcacaccaactttttcattatcaacaaataaagaactttttttgacaaccgaatcttgatgatttt |
26269128 |
T |
|
| Q |
253 |
taagatgaaaatcaaacccttttaattcttgttctt |
288 |
Q |
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| T |
26269127 |
taagatgaaaatcaaacccttttagttcttgttctt |
26269092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3111761 - 3111799
Alignment:
| Q |
1 |
caaatggaccaacaagaggaatttctaactccttttcct |
39 |
Q |
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| T |
3111761 |
caaatggaccaacaagaggaatttctaactccttttcct |
3111799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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