View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0179_low_1 (Length: 524)
Name: NF0179_low_1
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0179_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 79 - 461
Target Start/End: Complemental strand, 30654397 - 30654023
Alignment:
| Q |
79 |
atacttggctggggttgcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcaaacaagctgaaagaag |
178 |
Q |
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| T |
30654397 |
atacttggctggggtggcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcagacaagctgaaagaag |
30654298 |
T |
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| Q |
179 |
aggagacttgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcatggcagaagatcga |
278 |
Q |
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| T |
30654297 |
gggagacttgcatgacatacgaatatgcactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcagggcggaagatcga |
30654198 |
T |
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| Q |
279 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtg |
378 |
Q |
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| T |
30654197 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgtaggctattagcttacccaag-tttgaag-------tagcaatcgtgtg |
30654106 |
T |
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| Q |
379 |
gaagcatcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc |
461 |
Q |
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| T |
30654105 |
gaagcatcgcaaagagactccataaccaatactttaggtgtccgtactgttatgggaacaggaaaatatcttggtctcccttc |
30654023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 30653886 - 30653832
Alignment:
| Q |
457 |
ccttcttacattatgagcatatatctcctccctaataaattgattgatggcatag |
511 |
Q |
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| T |
30653886 |
ccttcttacattatgagcatacatctcctccctaataaattgattgatggcatag |
30653832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 506
Target Start/End: Complemental strand, 51085338 - 51085289
Alignment:
| Q |
457 |
ccttcttacattatgagcatatatctcctccctaataaattgattgatgg |
506 |
Q |
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| T |
51085338 |
ccttcttatgttatgagtatatatctcctccctaacaaattgattgatgg |
51085289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 461
Target Start/End: Complemental strand, 14859231 - 14859056
Alignment:
| Q |
284 |
tcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtggaagc |
383 |
Q |
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| T |
14859231 |
tcaagtgatgaataatattttaggaacctatgaagttacttttgggtaggctattagcttacccaagtcca-aagtgtactataacaaccgtgtggaaac |
14859133 |
T |
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| Q |
384 |
atcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc |
461 |
Q |
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| | | |||||| ||||| ||||||||| |||||| | ||||||| |||| ||| ||||||||||||||| ||||| |
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| T |
14859132 |
aacactaagagaatccatcaccaatactctaggtg-tcatgctgttttggggacaagaaaatatcttggtcttccttc |
14859056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 12716813 - 12716746
Alignment:
| Q |
187 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
254 |
Q |
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| T |
12716813 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12716746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 12778044 - 12777977
Alignment:
| Q |
187 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
254 |
Q |
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| T |
12778044 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12777977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 48028076 - 48028040
Alignment:
| Q |
220 |
ttatatctcacctattatttgcaaatgattgtttcct |
256 |
Q |
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| T |
48028076 |
ttatatctcacctattatttgctgatgattgtttcct |
48028040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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