View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0179_low_13 (Length: 251)

Name: NF0179_low_13
Description: NF0179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0179_low_13
NF0179_low_13
[»] chr5 (14 HSPs)
chr5 (108-222)||(12700616-12700730)
chr5 (108-222)||(12761614-12761728)
chr5 (1-76)||(42717557-42717632)
chr5 (30-76)||(35311900-35311946)
chr5 (1-90)||(18207091-18207180)
chr5 (17-90)||(43523821-43523894)
chr5 (30-89)||(30996670-30996728)
chr5 (1-75)||(35193928-35194002)
chr5 (35-109)||(2412687-2412763)
chr5 (4-89)||(12834504-12834589)
chr5 (35-108)||(29665024-29665096)
chr5 (30-90)||(4920899-4920959)
chr5 (4-76)||(12866481-12866553)
chr5 (37-89)||(18116480-18116532)
[»] chr4 (13 HSPs)
chr4 (30-109)||(6481991-6482072)
chr4 (4-90)||(11028152-11028238)
chr4 (11-90)||(7609049-7609128)
chr4 (30-109)||(39047010-39047091)
chr4 (11-80)||(26564920-26564989)
chr4 (24-89)||(39086237-39086302)
chr4 (1-89)||(11122796-11122884)
chr4 (30-90)||(31918514-31918574)
chr4 (30-90)||(44317614-44317674)
chr4 (30-80)||(17112978-17113028)
chr4 (30-108)||(37349171-37349251)
chr4 (31-76)||(43553539-43553584)
chr4 (24-80)||(19534538-19534594)
[»] chr1 (15 HSPs)
chr1 (11-109)||(33293467-33293567)
chr1 (11-109)||(44615411-44615511)
chr1 (11-109)||(44793058-44793158)
chr1 (30-109)||(16408995-16409076)
chr1 (34-106)||(9982849-9982923)
chr1 (30-109)||(17135000-17135081)
chr1 (30-76)||(20774654-20774700)
chr1 (34-76)||(34611161-34611203)
chr1 (30-109)||(34673237-34673318)
chr1 (30-109)||(39616345-39616426)
chr1 (11-108)||(2514811-2514911)
chr1 (26-87)||(5293357-5293418)
chr1 (30-79)||(29936507-29936556)
chr1 (35-76)||(40087424-40087465)
chr1 (30-90)||(23968653-23968713)
[»] chr2 (6 HSPs)
chr2 (5-90)||(19104767-19104852)
chr2 (30-109)||(37106745-37106826)
chr2 (30-90)||(12341674-12341734)
chr2 (30-90)||(44746064-44746124)
chr2 (4-76)||(24414061-24414133)
chr2 (30-90)||(30847020-30847080)
[»] chr8 (11 HSPs)
chr8 (30-90)||(1012691-1012751)
chr8 (4-109)||(5858581-5858688)
chr8 (30-76)||(2075789-2075835)
chr8 (11-109)||(20399644-20399744)
chr8 (4-90)||(4230659-4230745)
chr8 (30-109)||(14155584-14155665)
chr8 (30-109)||(27932465-27932546)
chr8 (34-80)||(29416146-29416192)
chr8 (30-108)||(6388471-6388551)
chr8 (30-90)||(24928022-24928082)
chr8 (30-90)||(32303134-32303194)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-109)||(7749-7848)
[»] chr7 (8 HSPs)
chr7 (11-90)||(7780086-7780165)
chr7 (4-90)||(17851930-17852016)
chr7 (4-109)||(3226875-3226982)
chr7 (30-90)||(21702737-21702797)
chr7 (1-61)||(24425475-24425535)
chr7 (13-76)||(44985856-44985919)
chr7 (30-109)||(10072523-10072604)
chr7 (11-76)||(45885701-45885766)
[»] chr3 (9 HSPs)
chr3 (13-109)||(48390755-48390853)
chr3 (1-90)||(4557231-4557320)
chr3 (30-87)||(42758450-42758507)
chr3 (11-79)||(39728755-39728823)
chr3 (1-76)||(29284423-29284498)
chr3 (30-88)||(42243462-42243520)
chr3 (34-108)||(20087050-20087126)
chr3 (30-90)||(7469733-7469793)
chr3 (30-90)||(39655228-39655288)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-90)||(14110-14199)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-76)||(90678-90753)
[»] chr6 (8 HSPs)
chr6 (30-109)||(5863338-5863419)
chr6 (30-76)||(15498411-15498457)
chr6 (11-76)||(31496521-31496586)
chr6 (11-76)||(31501907-31501972)
chr6 (30-90)||(3483878-3483938)
chr6 (30-90)||(10188035-10188095)
chr6 (30-90)||(30986326-30986386)
chr6 (30-90)||(32853917-32853977)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 12700730 - 12700616
Alignment:
Q  108 atcaaaacaattcttctctcttgtgttgtccctgctcgtgagtctctctctnnnnnnntaaccacacacactgccgccagtctcaacaacagctctctct 207  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  12700730 atcaaaacaattcttctctcttgtgttgtccctcctcgcgagtctctctctcaccccctaaccacacacactgccgccagtctcaacaacagctctctct 12700631  T
Q  208 cgcgtgagcccctgc 222  Q
    ||||| |||||||||    
T  12700630 cgcgtaagcccctgc 12700616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 12761728 - 12761614
Alignment:
Q  108 atcaaaacaattcttctctcttgtgttgtccctgctcgtgagtctctctctnnnnnnntaaccacacacactgccgccagtctcaacaacagctctctct 207  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  12761728 atcaaaacaattcttctctcttgtgttgtccctcctcgcgagtctctctctcaccccctaaccacacacactgccgccagtctcaacaacagctctctct 12761629  T
Q  208 cgcgtgagcccctgc 222  Q
    ||||| |||||||||    
T  12761628 cgcgtaagcccctgc 12761614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42717557 - 42717632
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||| ||||||||||| | | ||| |||||||||||||||| ||||  ||||||||| || |||||||||||    
T  42717557 actcatacctgtggttacccgtccgaaccaaacccaatttgacgggtttttcccgttttgactggatttgggtatg 42717632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 35311946 - 35311900
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  35311946 aaacccaatttgacggattttttccgttttgactgagtttgggtatg 35311900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18207180 - 18207091
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    ||||||||  |||||||||||  ||||| |||||||||||||||  ||||  ||||||||| ||  |||||| ||||||| |||||||||    
T  18207180 actcatacccgtggttacccacccaaaccaaacccaatttgacgtgtttttcccgttttgactgggtttgggcatgagtttgggttttcc 18207091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 43523894 - 43523821
Alignment:
Q  17 acccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||| ||||| || ||| ||||||||||||||  ||| ||||| ||| |||||||||||||| |||||||||    
T  43523894 acccatccaaaccaatcccgatttgacggatttttcccgatttgactgagtttgggtatgagtttgggttttcc 43523821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 30996728 - 30996670
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttc 89  Q
    |||||||||||||||||||||| ||||||||| ||  |||||||||||||  ||||||||    
T  30996728 aaacccaatttgacggattttc-ccgttttgactgggtttgggtatgagtatgggttttc 30996670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35193928 - 35194002
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtat 75  Q
    ||||||||  ||||||||||   ||||  ||||||||||||||||||||| |||||||||  || ||||||||||    
T  35193928 actcatactcgtggttacccgcccaaatcaaacccaatttgacggattttttccgttttggctggatttgggtat 35194002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 2412687 - 2412763
Alignment:
Q  35 caatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    ||||||||||||||||| || |||||| ||| |||||||||| ||| |  ||||  ||||||| |||||||||||||    
T  2412687 caatttgacggattttccccattttgattgagtttgggtatgggtttgaatttttcccaatttcaaaacacgggtat 2412763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 12834504 - 12834589
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttc 89  Q
    ||||||||||||||||| | | ||| |||| ||||||||||| ||||| || |||||| ||  |||||||||| ||  ||||||||    
T  12834504 catacatgtggttacccgtccgaaccaaactcaatttgacgggttttccccattttgactgggtttgggtatgggtatgggttttc 12834589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 29665096 - 29665024
Alignment:
Q  35 caatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttccaatttaaaaacacgggta 108  Q
    ||||||||||| |||| |||| ||||| ||| |||| ||||||||| ||||| ||| |||| ||||||||||||    
T  29665096 caatttgacgggtttt-tccgctttgattgagtttgtgtatgagtttgggttctccgatttcaaaacacgggta 29665024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 4920959 - 4920899
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||||||||||||| ||  ||||| |||| ||  |||||||||    
T  4920959 aaacccaatttgacgggttttctccgttttgactgggtttggttatgggtatgggttttcc 4920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 12866481 - 12866553
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||||||||| | | ||| ||| |||||||||||| ||||| || |||||| ||  ||||||||||    
T  12866481 catacatgtggttacccgtccgaaccaaatccaatttgacgggttttccccattttgactgggtttgggtatg 12866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 18116480 - 18116532
Alignment:
Q  37 atttgacggattttctccgttttgaatgaatttgggtatgagttagggttttc 89  Q
    ||||||||||||||  ||| ||||| ||| |||||||||||||| ||||||||    
T  18116480 atttgacggatttttcccgatttgactgagtttgggtatgagtttgggttttc 18116532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 6481991 - 6482072
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||| ||||||||||||||||||| ||||||| ||  |||||||||| ||| |||||||  |||||||||||||||||||||    
T  6481991 aaactcaatttgacggattttctctgttttgattgggtttgggtatgggtttgggttttccccaatttaaaaacacgggtat 6482072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 11028238 - 11028152
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||| |||||||||||  | ||| |||||||||||||||| ||||||||||||||| || ||||||||||| ||  |||||||||    
T  11028238 catacacgtggttacccacccgaaccaaacccaatttgacgggttttctccgttttgactggatttgggtatgggtatgggttttcc 11028152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 7609128 - 7609049
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||  | |||||||||||||||||||| ||||| ||||||||| || ||||||||||| ||  |||||||||    
T  7609128 gtggttacccacccgaactaaacccaatttgacgggttttccccgttttgactggatttgggtatgggtatgggttttcc 7609049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 39047091 - 39047010
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    ||||||||||||| || ||||||||||||||| |||||||| ||||| ||  |||||||  |||||||  ||||||||||||    
T  39047091 aaacccaatttgatgggttttctccgttttgactgaatttgagtatgggtatgggttttccccaatttccaaacacgggtat 39047010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 26564989 - 26564920
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagtt 80  Q
    |||||||||||  | ||| ||| ||||||||||||||||||| |||||||| ||  ||||||||||||||    
T  26564989 gtggttacccacccgaaccaaatccaatttgacggattttcttcgttttgactgggtttgggtatgagtt 26564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 39086302 - 39086237
Alignment:
Q  24 caaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttc 89  Q
    ||||| |||| ||||||||||||||||||||||||||| ||  ||||| |||||||| | ||||||    
T  39086302 caaaccaaactcaatttgacggattttctccgttttgattgggtttggatatgagtttgagttttc 39086237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11122796 - 11122884
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttc 89  Q
    ||||||||  ||||||||||   | ||| |||| |||||||||||||||| |||||||||| ||| |||||||||| ||  ||||||||    
T  11122796 actcatacccgtggttacccgcccgaaccaaactcaatttgacggattttttccgttttgactgagtttgggtatgggtatgggttttc 11122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 31918514 - 31918574
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||||||  |||||||||    
T  31918514 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgagtatgggttttcc 31918574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 44317674 - 44317614
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||||||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  44317674 aaacccaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttcc 44317614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 17112978 - 17113028
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagtt 80  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||| |||||||    
T  17112978 aaacacaatttgacggattttctccgctttgactgagtttgggaatgagtt 17113028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 37349251 - 37349171
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggta 108  Q
    |||||||||||||| | ||||| ||||||||| ||  |||||||||||||| | |||||  || |||| ||||||||||||    
T  37349251 aaacccaatttgacaggttttccccgttttgactgggtttgggtatgagtttgagttttccccgatttcaaaacacgggta 37349171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 43553584 - 43553539
Alignment:
Q  31 aacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||||||| ||||||||| ||||| ||| ||||||||||    
T  43553584 aacccaatttgacgggttttctccgctttgactgagtttgggtatg 43553539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19534594 - 19534538
Alignment:
Q  24 caaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagtt 80  Q
    ||||| ||| |||||||||||| ||||||||||||| | ||  ||||||||||||||    
T  19534594 caaaccaaatccaatttgacgggttttctccgttttcattgggtttgggtatgagtt 19534538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 33293467 - 33293567
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggta 108  Q
    |||| ||||||||| ||||||| ||| ||||||| ||||| |||||||||| ||  |||||||||||||| |||||||  || |||| ||||||||||||    
T  33293467 gtgggtacccattcgaactaaatccattttgacgaattttttccgttttgattgggtttgggtatgagtttgggtttttcccgatttcaaaacacgggta 33293566  T
Q  109 t 109  Q
    |    
T  33293567 t 33293567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 44615411 - 44615511
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc--aatttaaaaacacgggta 108  Q
    |||||||||||  || || |||| ||||||||||| ||||  ||||||||| ||  |||||||||||||| |||||||||   |||||||||||||||||    
T  44615411 gtggttacccacccagaccaaactcaatttgacgggtttttcccgttttgactgggtttgggtatgagtttgggttttccctgatttaaaaacacgggta 44615510  T
Q  109 t 109  Q
    |    
T  44615511 t 44615511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 44793158 - 44793058
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc--aatttaaaaacacgggta 108  Q
    |||||||||||  || || |||| ||||||||||| ||||  ||||||||| ||  |||||||||||||| |||||||||   |||||||||||||||||    
T  44793158 gtggttacccacccagaccaaactcaatttgacgggtttttcccgttttgactgggtttgggtatgagtttgggttttccctgatttaaaaacacgggta 44793059  T
Q  109 t 109  Q
    |    
T  44793058 t 44793058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 16409076 - 16408995
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||  ||||||| |||||||||||||    
T  16409076 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccaatttcaaaacacgggtat 16408995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 9982849 - 9982923
Alignment:
Q  34 ccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacggg 106  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||| |  ||||  ||||||| ||||||||||    
T  9982849 ccaatttgatggattttctccgttttgactgggtttgggtatgagtttgaattttccccaatttcaaaacacggg 9982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 17135081 - 17135000
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||| || ||  |||||||  || |||| |||||||||||||    
T  17135081 aaacccaatttgacggattttctctgttttgactgggtttgggtgtgggtatgggttttccccgatttcaaaacacgggtat 17135000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 20774700 - 20774654
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||||||||||||||| ||||||||| ||  ||||||||||    
T  20774700 aaacccaatttgacggattttccccgttttgactgggtttgggtatg 20774654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 34611203 - 34611161
Alignment:
Q  34 ccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||    
T  34611203 ccaatttgacgggttttccccgttttgattgaatttgggtatg 34611161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 34673237 - 34673318
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    ||||||||||| |||||||||| || |||| | ||  |||||||||| ||| |||||||  ||||||| |||||||||||||    
T  34673237 aaacccaatttaacggattttccccattttaactgggtttgggtatgggtttgggtttttcccaatttcaaaacacgggtat 34673318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 39616426 - 39616345
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||| ||||||||||  ||||| ||||||||| ||| |||||||||||||  |||||||  || |||| |||||||||||||    
T  39616426 aaactcaatttgacgagttttccccgttttgactgagtttgggtatgagtatgggttttcccctatttcaaaacacgggtat 39616345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 2514911 - 2514811
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttggg-tatgagttagggtttt--ccaatttaaaaacacgggt 107  Q
    |||| ||||| | ||||| |||||||| |||| || ||||| ||||||||| ||  |||||| |||||||| |||||||  ||||||| |||||||||||    
T  2514911 gtgggtacccgtccaaaccaaacccaacttgatgggttttccccgttttgattgggtttggggtatgagtttgggttttccccaatttcaaaacacgggt 2514812  T
Q  108 a 108  Q
    |    
T  2514811 a 2514811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 5293357 - 5293418
Alignment:
Q  26 aactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttt 87  Q
    ||||||||||||||| |||| ||||||||| ||||| ||  |||| ||||||||| ||||||    
T  5293357 aactaaacccaatttaacgggttttctccgctttgactgtgtttgagtatgagtttgggttt 5293418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 29936556 - 29936507
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagt 79  Q
    |||||||||||||||| ||||| ||||||||| | | |||||||||||||    
T  29936556 aaacccaatttgacgggttttccccgttttgactaagtttgggtatgagt 29936507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 40087424 - 40087465
Alignment:
Q  35 caatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    
T  40087424 caatttgacggattttccccgttttgactgagtttgggtatg 40087465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 23968713 - 23968653
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||||||||| || |||||| ||  |||||||||| ||  |||||||||    
T  23968713 aaacccaatttgacggattttccccattttgattgggtttgggtatgggtatgggttttcc 23968653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 19104767 - 19104852
Alignment:
Q  5 atacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    ||||||||||||||| || | ||  ||||||||||||| || |||| |||||||||| ||  |||||||||||||| |||||||||    
T  19104767 atacatgtggttaccaatccgaatcaaacccaatttgatgggttttttccgttttgattgggtttgggtatgagtttgggttttcc 19104852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 37106826 - 37106745
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||| ||  |||||||  || |||| |||||||||||||    
T  37106826 aaacccaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttccccgatttcaaaacacgggtat 37106745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 12341734 - 12341674
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||| ||  |||||||||    
T  12341734 aaacccaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttcc 12341674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 44746064 - 44746124
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||||  || |||||||||    
T  44746064 aaacccaatttgacgggttttccccgttttgattgagtttgggtatggatttgggttttcc 44746124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 24414061 - 24414133
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||| |||||||||||   | ||| |||||||||||||||| ||||| ||||||||| ||  ||||||||||    
T  24414061 catacctgtggttacccgcccgaaccaaacccaatttgacgggttttccccgttttgattgggtttgggtatg 24414133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 30847080 - 30847020
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  30847080 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttcc 30847020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 1012751 - 1012691
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| |||||  |||||||| ||| |||||||||||||| |||||||||    
T  1012751 aaacccaatttgacgggttttcctcgttttgattgagtttgggtatgagtttgggttttcc 1012691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 5858581 - 5858688
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaac 101  Q
    ||||| |||||||||| |  | ||| ||| |||||||||||| ||||| ||||||||| ||  |||||||||| ||| |||||||  || ||||||||||    
T  5858581 catacctgtggttacctacccgaaccaaatccaatttgacgggttttccccgttttgattgggtttgggtatgggtttgggtttttcccgatttaaaaac 5858680  T
Q  102 acgggtat 109  Q
    ||||||||    
T  5858681 acgggtat 5858688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 2075789 - 2075835
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||    
T  2075789 aaacccaatttgacggattttctccgttttgactgggtttgggtatg 2075835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 20399744 - 20399644
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttt--tccaatttaaaaacacgggta 108  Q
    ||||||||||  || ||| |||||||||||||||  ||||| ||||||||| ||  |||||||||| ||| ||||||  ||| |||| ||||||||||||    
T  20399744 gtggttacccgctcgaaccaaacccaatttgacgagttttccccgttttgactgggtttgggtatgggtttgggttttctccgatttcaaaacacgggta 20399645  T
Q  109 t 109  Q
    |    
T  20399644 t 20399644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 4230659 - 4230745
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||||   | ||| |||||||||||||||| ||||| || |||||| ||  |||||||||| ||  |||||||||    
T  4230659 catacatgtggttacccgcccgaaccaaacccaatttgacgggttttccccattttgactgggtttgggtatgggtatgggttttcc 4230745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 14155665 - 14155584
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||| | ||| ||  |||||||||||||| |||||||  || |||| |||||||||||||    
T  14155665 aaacccaatttgacgggttttccccggtatgactgggtttgggtatgagtttgggtttttcccgatttcaaaacacgggtat 14155584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 27932546 - 27932465
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||  || |||| |||||||||||||    
T  27932546 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtat 27932465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 29416146 - 29416192
Alignment:
Q  34 ccaatttgacggattttctccgttttgaatgaatttgggtatgagtt 80  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||||||    
T  29416146 ccaatttgacgggttttccccgttttgactgagtttgggtatgagtt 29416192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 6388471 - 6388551
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggta 108  Q
    |||| |||||||||||  |||||||||||||| ||| |||||||||| ||| |||| ||  || |||| ||||||||||||    
T  6388471 aaactcaatttgacgggctttctccgttttgactgagtttgggtatgggtttgggtcttccccgattttaaaacacgggta 6388551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 24928082 - 24928022
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  24928082 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttcc 24928022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 32303194 - 32303134
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  32303194 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttcc 32303134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 7848 - 7749
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttt-tccaatttaaaaacacgggtat 109  Q
    |||||||||||  | |||||||   |||||||||| ||||| ||||||||| ||| |||||||||| |||||  ||| |||||||| |||||||||||||    
T  7848 gtggttacccacccgaactaaatttaatttgacgggttttccccgttttgattgagtttgggtatgtgttagattttctccaatttcaaaacacgggtat 7749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 7780165 - 7780086
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||| | ||| |||| ||||||||||||||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  7780165 gtggttacccatccgaaccaaactcaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttcc 7780086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17852016 - 17851930
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    ||||| |||||||||||   | ||| ||||||||||||| |||||||||||||||||| ||  |||||||||| ||  |||||||||    
T  17852016 catacttgtggttacccgcccgaaccaaacccaatttgatggattttctccgttttgactgggtttgggtatgggtatgggttttcc 17851930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 3226875 - 3226982
Alignment:
Q  4 catacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaac 101  Q
    |||||||| |||||||| | | ||| ||||||||||||||||||||||  |||||| | ||| |||| ||||| ||  |||||||  || |||| |||||    
T  3226875 catacatgcggttacccgtccgaaccaaacccaatttgacggattttcctcgttttaactgagtttgagtatgggtatgggttttccccgatttcaaaac 3226974  T
Q  102 acgggtat 109  Q
    ||||||||    
T  3226975 acgggtat 3226982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 21702797 - 21702737
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||||||||  ||||||||| ||  |||||||||||||  |||||||||    
T  21702797 aaacccaatttgacggatttttcccgttttgactgggtttgggtatgagtatgggttttcc 21702737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24425535 - 24425475
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttga 61  Q
    ||||||||| |||||||||    | ||| ||||||||||||||||||||||||||||||||    
T  24425535 actcatacacgtggttaccagcccgaaccaaacccaatttgacggattttctccgttttga 24425475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 44985856 - 44985919
Alignment:
Q  13 ggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||| | ||| ||| | |||||||||||||||||||||||||| ||  ||||||||||    
T  44985856 ggttacccatccgaaccaaatctaatttgacggattttctccgttttgattgggtttgggtatg 44985919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 10072604 - 10072523
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||  || |||| |||||||||||||    
T  10072604 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtat 10072523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 45885701 - 45885766
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||  || ||| ||||||||||| |||| ||||||||||||||| ||  ||||||||||    
T  45885701 gtggttacccgctcgaaccaaacccaatttaacgggttttctccgttttgactgggtttgggtatg 45885766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 48390755 - 48390853
Alignment:
Q  13 ggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||| ||| ||| ||| |||||||||||||||||| ||||||||| ||  |||||||||| ||  |||||||  || |||| |||||||||||||    
T  48390755 ggttacccgttcgaaccaaatccaatttgacggattttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtat 48390853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4557231 - 4557320
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    ||||||||  |||||||||||  | ||| |||||||||||||||| ||||  ||||||||| ||  |||||||||| ||| |||||||||    
T  4557231 actcatacccgtggttacccacccgaacaaaacccaatttgacgggtttttcccgttttgactgggtttgggtatgggtttgggttttcc 4557320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 42758507 - 42758450
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttt 87  Q
    |||||||||||||||||||||| ||||||| | ||  |||||||||||||| ||||||    
T  42758507 aaacccaatttgacggattttccccgttttaactgggtttgggtatgagtttgggttt 42758450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 39728823 - 39728755
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagt 79  Q
    |||||||||| | | ||| ||| |||||||||||||||||| ||||||||| ||  |||||||||||||    
T  39728823 gtggttacccgtccgaaccaaatccaatttgacggattttccccgttttgactgggtttgggtatgagt 39728755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29284498 - 29284423
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||  ||||||||||   | ||| |||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  29284498 actcatacccgtggttacccgcccgaaccaaacccaatttgacgggttttctccgttttgactgggtttgggtatg 29284423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 42243520 - 42243462
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt 88  Q
    |||||||||||||||| ||||| ||| ||||| ||  |||||||||||||| |||||||    
T  42243520 aaacccaatttgacgggttttccccggtttgactgggtttgggtatgagtttgggtttt 42243462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 20087126 - 20087050
Alignment:
Q  34 ccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggta 108  Q
    |||||||||||||||||||||||||||| ||  ||||| |||| ||  |||||||  || |||| ||||||||||||    
T  20087126 ccaatttgacggattttctccgttttgactgggtttggatatgggtatgggttttccccgatttcaaaacacgggta 20087050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 7469733 - 7469793
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  7469733 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttcc 7469793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 39655228 - 39655288
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  39655228 aaacccaatttgacgggttttccccgttttgattgggtttgggtatgggtatgggttttcc 39655288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14110 - 14199
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    ||||||||  |||||||||||  ||||| |||||||||||||||| ||||  ||||||||  ||  |||||||||||||| | |||||||    
T  14110 actcatactcgtggttacccacccaaaccaaacccaatttgacgggtttttcccgttttgtttgggtttgggtatgagtttgagttttcc 14199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 90753 - 90678
Alignment:
Q  1 actcatacatgtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||  ||||||||||   | |||||||| ||||||||||||||||| ||||||||| ||  ||||||||||    
T  90753 actcatacccgtggttacccgcccgaactaaactcaatttgacggattttccccgttttgactgggtttgggtatg 90678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 5863338 - 5863419
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggtttt--ccaatttaaaaacacgggtat 109  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||  || |||| |||||||||||||    
T  5863338 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttccccgatttcaaaacacgggtat 5863419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 15498457 - 15498411
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||||    
T  15498457 aaacccaatttaacgggttttctccgttttgaatgggtttgggtatg 15498411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 31496586 - 31496521
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||| | ||||| |||| ||||||||||| ||||| ||||||||| ||  ||||||||||    
T  31496586 gtggttacccgtccaaaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatg 31496521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 31501972 - 31501907
Alignment:
Q  11 gtggttacccattcaaactaaacccaatttgacggattttctccgttttgaatgaatttgggtatg 76  Q
    |||||||||| | ||||| |||| ||||||||||| ||||| ||||||||| ||  ||||||||||    
T  31501972 gtggttacccgtccaaaccaaactcaatttgacgggttttccccgttttgactgggtttgggtatg 31501907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 3483878 - 3483938
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  3483878 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgtgtatgggttttcc 3483938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 10188035 - 10188095
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||| ||||||||| ||  |||||||||| ||  |||||||||    
T  10188035 aaacccaatttgacgggttttccccgttttgactgggtttgggtatgggtatgggttttcc 10188095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 30986386 - 30986326
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||| ||||||||||| ||||| ||||||||| ||| |||||||||| ||  |||||||||    
T  30986386 aaactcaatttgacgggttttccccgttttgactgagtttgggtatgggtatgggttttcc 30986326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 32853977 - 32853917
Alignment:
Q  30 aaacccaatttgacggattttctccgttttgaatgaatttgggtatgagttagggttttcc 90  Q
    |||||||||||||||| ||||||||||||||| ||  ||||| |||| ||  |||||||||    
T  32853977 aaacccaatttgacgggttttctccgttttgactgggtttggttatgggtatgggttttcc 32853917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 997 times since January 2019
Visitors: 2242